This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3e0y

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:12, 9 February 2022) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3e0y.png|left|200px]]
 
-
<!--
+
==The crystal structure of a conserved domain from a protein of Geobacter sulfurreducens PCA==
-
The line below this paragraph, containing "STRUCTURE_3e0y", creates the "Structure Box" on the page.
+
<StructureSection load='3e0y' size='340' side='right'caption='[[3e0y]], [[Resolution|resolution]] 3.10&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3e0y]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Atcc_51573 Atcc 51573]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3E0Y OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3E0Y FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-
-->
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
{{STRUCTURE_3e0y| PDB=3e0y | SCENE= }}
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">GSU1116 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=35554 ATCC 51573])</td></tr>
-
 
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3e0y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3e0y OCA], [https://pdbe.org/3e0y PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3e0y RCSB], [https://www.ebi.ac.uk/pdbsum/3e0y PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3e0y ProSAT], [https://www.topsan.org/Proteins/MCSG/3e0y TOPSAN]</span></td></tr>
-
===The crystal structure of a conserved domain from a protein of Geobacter sulfurreducens PCA===
+
</table>
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
==About this Structure==
+
Check<jmol>
-
3E0Y is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Geobacter_sulfurreducens Geobacter sulfurreducens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3E0Y OCA].
+
<jmolCheckbox>
-
[[Category: Geobacter sulfurreducens]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/e0/3e0y_consurf.spt"</scriptWhenChecked>
-
[[Category: Bigelow, L.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Clancy, S.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Joachimiak, A.]]
+
</jmolCheckbox>
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3e0y ConSurf].
-
[[Category: Tan, K.]]
+
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Atcc 51573]]
 +
[[Category: Large Structures]]
 +
[[Category: Bigelow, L]]
 +
[[Category: Clancy, S]]
 +
[[Category: Joachimiak, A]]
 +
[[Category: Structural genomic]]
 +
[[Category: Tan, K]]
[[Category: Apc87688 2]]
[[Category: Apc87688 2]]
[[Category: Conserved domain]]
[[Category: Conserved domain]]
[[Category: Geobacter sulfurreducens pca]]
[[Category: Geobacter sulfurreducens pca]]
[[Category: Mcsg]]
[[Category: Mcsg]]
-
[[Category: Midwest center for structural genomic]]
+
[[Category: PSI, Protein structure initiative]]
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi-2]]
+
-
[[Category: Structural genomic]]
+
[[Category: Unknown function]]
[[Category: Unknown function]]
- 
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 13:54:10 2008''
 

Current revision

The crystal structure of a conserved domain from a protein of Geobacter sulfurreducens PCA

PDB ID 3e0y

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools