This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1xfj

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (14:07, 9 May 2024) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1xfj.png|left|200px]]
 
-
<!--
+
==Crystal structure of protein CC_0490 from Caulobacter crescentus, Pfam DUF152==
-
The line below this paragraph, containing "STRUCTURE_1xfj", creates the "Structure Box" on the page.
+
<StructureSection load='1xfj' size='340' side='right'caption='[[1xfj]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1xfj]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Caulobacter_vibrioides Caulobacter vibrioides]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XFJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1XFJ FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.75&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=BME:BETA-MERCAPTOETHANOL'>BME</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
{{STRUCTURE_1xfj| PDB=1xfj | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1xfj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xfj OCA], [https://pdbe.org/1xfj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1xfj RCSB], [https://www.ebi.ac.uk/pdbsum/1xfj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1xfj ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/1xfj TOPSAN]</span></td></tr>
-
 
+
</table>
-
===Crystal structure of protein CC_0490 from Caulobacter crescentus, Pfam DUF152===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/Q9AAV3_CAUVC Q9AAV3_CAUVC]
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
1XFJ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Caulobacter_vibrioides Caulobacter vibrioides]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XFJ OCA].
+
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xf/1xfj_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1xfj ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
[[Category: Caulobacter vibrioides]]
[[Category: Caulobacter vibrioides]]
-
[[Category: Burley, S K.]]
+
[[Category: Large Structures]]
-
[[Category: Krishnamurthy, N R.]]
+
[[Category: Burley SK]]
-
[[Category: Kumaran, D.]]
+
[[Category: Krishnamurthy NR]]
-
[[Category: NYSGXRC, New York Structural GenomiX Research Consortium.]]
+
[[Category: Kumaran D]]
-
[[Category: Swaminathan, S.]]
+
[[Category: Swaminathan S]]
-
[[Category: Alpha-beta-beta-alpha]]
+
-
[[Category: Hypothetical protein]]
+
-
[[Category: New york structural genomix research consortium]]
+
-
[[Category: Nysgxrc]]
+
-
[[Category: Structural genomic]]
+
-
[[Category: Two-domain structure]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 14:14:50 2008''
+

Current revision

Crystal structure of protein CC_0490 from Caulobacter crescentus, Pfam DUF152

PDB ID 1xfj

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools