This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2hs5

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:12, 5 January 2022) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2hs5.png|left|200px]]
 
-
<!--
+
==Structural Genomics, the crystal structure of a putative transcriptional regulator GntR from Rhodococcus sp. RHA1==
-
The line below this paragraph, containing "STRUCTURE_2hs5", creates the "Structure Box" on the page.
+
<StructureSection load='2hs5' size='340' side='right'caption='[[2hs5]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2hs5]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhojr Rhojr]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HS5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2HS5 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene></td></tr>
-
-->
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
{{STRUCTURE_2hs5| PDB=2hs5 | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2hs5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2hs5 OCA], [https://pdbe.org/2hs5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2hs5 RCSB], [https://www.ebi.ac.uk/pdbsum/2hs5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2hs5 ProSAT], [https://www.topsan.org/Proteins/MCSG/2hs5 TOPSAN]</span></td></tr>
-
 
+
</table>
-
===Structural Genomics, the crystal structure of a putative transcriptional regulator GntR from Rhodococcus sp. RHA1===
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
==About this Structure==
+
<jmolCheckbox>
-
2HS5 is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Rhodococcus_sp. Rhodococcus sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HS5 OCA].
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hs/2hs5_consurf.spt"</scriptWhenChecked>
-
[[Category: Rhodococcus sp.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Edwards, A.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Joachimiak, A.]]
+
</jmolCheckbox>
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2hs5 ConSurf].
-
[[Category: Onopriyenko, A.]]
+
<div style="clear:both"></div>
-
[[Category: Savchenko, A.]]
+
__TOC__
-
[[Category: Skarina, T.]]
+
</StructureSection>
-
[[Category: Tan, K.]]
+
[[Category: Large Structures]]
 +
[[Category: Rhojr]]
 +
[[Category: Edwards, A]]
 +
[[Category: Joachimiak, A]]
 +
[[Category: Structural genomic]]
 +
[[Category: Onopriyenko, A]]
 +
[[Category: Savchenko, A]]
 +
[[Category: Skarina, T]]
 +
[[Category: Tan, K]]
[[Category: Apc6050]]
[[Category: Apc6050]]
[[Category: Gntr]]
[[Category: Gntr]]
[[Category: Mcsg]]
[[Category: Mcsg]]
-
[[Category: Midwest center for structural genomic]]
+
[[Category: PSI, Protein structure initiative]]
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi-2]]
+
[[Category: Rhodococcus sp. rha1]]
[[Category: Rhodococcus sp. rha1]]
-
[[Category: Structural genomic]]
+
[[Category: Transcription regulator]]
[[Category: Transcriptional regulator]]
[[Category: Transcriptional regulator]]
- 
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 14:40:57 2008''
 

Current revision

Structural Genomics, the crystal structure of a putative transcriptional regulator GntR from Rhodococcus sp. RHA1

PDB ID 2hs5

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools