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1sdj

From Proteopedia

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{{Seed}}
 
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[[Image:1sdj.png|left|200px]]
 
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==X-RAY STRUCTURE OF YDDE_ECOLI NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET ET25.==
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The line below this paragraph, containing "STRUCTURE_1sdj", creates the "Structure Box" on the page.
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<StructureSection load='1sdj' size='340' side='right'caption='[[1sdj]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[1sdj]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1p9v 1p9v]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SDJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1SDJ FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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{{STRUCTURE_1sdj| PDB=1sdj | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1sdj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1sdj OCA], [https://pdbe.org/1sdj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1sdj RCSB], [https://www.ebi.ac.uk/pdbsum/1sdj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1sdj ProSAT], [https://www.topsan.org/Proteins/NESGC/1sdj TOPSAN]</span></td></tr>
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</table>
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===X-RAY STRUCTURE OF YDDE_ECOLI NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET ET25.===
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== Function ==
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[https://www.uniprot.org/uniprot/YDDE_ECOLI YDDE_ECOLI]
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== Evolutionary Conservation ==
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<!--
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[[Image:Consurf_key_small.gif|200px|right]]
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The line below this paragraph, {{ABSTRACT_PUBMED_15545603}}, adds the Publication Abstract to the page
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Check<jmol>
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(as it appears on PubMed at http://www.pubmed.gov), where 15545603 is the PubMed ID number.
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/sd/1sdj_consurf.spt"</scriptWhenChecked>
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{{ABSTRACT_PUBMED_15545603}}
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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==About this Structure==
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</jmolCheckbox>
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1SDJ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1p9v 1p9v]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SDJ OCA].
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1sdj ConSurf].
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<div style="clear:both"></div>
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==Reference==
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__TOC__
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Structure and function of the phenazine biosynthetic protein PhzF from Pseudomonas fluorescens., Blankenfeldt W, Kuzin AP, Skarina T, Korniyenko Y, Tong L, Bayer P, Janning P, Thomashow LS, Mavrodi DV, Proc Natl Acad Sci U S A. 2004 Nov 23;101(47):16431-6. Epub 2004 Nov 15. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15545603 15545603]
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</StructureSection>
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
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[[Category: Edstrom, W.]]
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[[Category: Large Structures]]
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[[Category: Korniyenko, Y.]]
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[[Category: Edstrom W]]
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[[Category: Kuzin, A P.]]
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[[Category: Korniyenko Y]]
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[[Category: NESG, Northeast Structural Genomics Consortium.]]
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[[Category: Kuzin AP]]
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[[Category: Savchenko, A.]]
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[[Category: Savchenko A]]
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[[Category: Skarina, T.]]
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[[Category: Skarina T]]
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[[Category: Tong, L.]]
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[[Category: Tong L]]
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[[Category: Nesg]]
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[[Category: Northeast structural genomics consortium]]
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[[Category: Protein structure initiative]]
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[[Category: Psi]]
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[[Category: Structural genomic]]
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[[Category: Unknown function]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 15:03:33 2008''
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Current revision

X-RAY STRUCTURE OF YDDE_ECOLI NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET ET25.

PDB ID 1sdj

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