2ict

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{{Seed}}
 
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[[Image:2ict.png|left|200px]]
 
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==Crystal structure of the bacterial antitoxin HigA from Escherichia coli at pH 8.5. Northeast Structural Genomics TARGET ER390.==
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The line below this paragraph, containing "STRUCTURE_2ict", creates the "Structure Box" on the page.
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<StructureSection load='2ict' size='340' side='right'caption='[[2ict]], [[Resolution|resolution]] 1.63&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2ict]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_CFT073 Escherichia coli CFT073]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ICT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ICT FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.63&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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{{STRUCTURE_2ict| PDB=2ict | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ict FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ict OCA], [https://pdbe.org/2ict PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ict RCSB], [https://www.ebi.ac.uk/pdbsum/2ict PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ict ProSAT], [https://www.topsan.org/Proteins/NESGC/2ict TOPSAN]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/YDDM_ECOL6 YDDM_ECOL6]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ic/2ict_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ict ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Bacterial toxin-antitoxin (TA) systems serve a variety of physiological functions including regulation of cell growth and maintenance of foreign genetic elements. Sequence analyses suggest that TA families are linked by complex evolutionary relationships reflecting likely swapping of functional domains between different TA families. Our crystal structures of Phd-Doc from bacteriophage P1, the HigA antitoxin from Escherichia coli CFT073, and YeeU of the YeeUWV systems from E. coli K12 and Shigella flexneri confirm this inference and reveal additional, unanticipated structural relationships. The growth-regulating Doc toxin exhibits structural similarity to secreted virulence factors that are toxic for eukaryotic target cells. The Phd antitoxin possesses the same fold as both the YefM and NE2111 antitoxins that inhibit structurally unrelated toxins. YeeU, which has an antitoxin-like activity that represses toxin expression, is structurally similar to the ribosome-interacting toxins YoeB and RelE. These observations suggest extensive functional exchanges have occurred between TA systems during bacterial evolution.
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===Crystal structure of the bacterial antitoxin HigA from Escherichia coli at pH 8.5. Northeast Structural Genomics TARGET ER390.===
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Crystal structures of Phd-Doc, HigA, and YeeU establish multiple evolutionary links between microbial growth-regulating toxin-antitoxin systems.,Arbing MA, Handelman SK, Kuzin AP, Verdon G, Wang C, Su M, Rothenbacher FP, Abashidze M, Liu M, Hurley JM, Xiao R, Acton T, Inouye M, Montelione GT, Woychik NA, Hunt JF Structure. 2010 Aug 11;18(8):996-1010. PMID:20696400<ref>PMID:20696400</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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==About this Structure==
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</div>
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2ICT is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ICT OCA].
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<div class="pdbe-citations 2ict" style="background-color:#fffaf0;"></div>
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[[Category: Escherichia coli]]
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== References ==
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[[Category: Abashidze, M.]]
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<references/>
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[[Category: Acton, T B.]]
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__TOC__
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[[Category: Arbing, M A.]]
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</StructureSection>
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[[Category: Baran, M C.]]
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[[Category: Escherichia coli CFT073]]
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[[Category: Cunningham, K.]]
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[[Category: Large Structures]]
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[[Category: Hunt, J F.]]
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[[Category: Abashidze M]]
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[[Category: Hurley, J M.]]
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[[Category: Acton TB]]
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[[Category: Inouye, M.]]
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[[Category: Arbing MA]]
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[[Category: Janjua, H.]]
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[[Category: Baran MC]]
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[[Category: Liu, J.]]
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[[Category: Cunningham K]]
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[[Category: Ma, L C.]]
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[[Category: Hunt JF]]
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[[Category: Montelione, G T.]]
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[[Category: Hurley JM]]
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[[Category: NESG, Northeast Structural Genomics Consortium.]]
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[[Category: Inouye M]]
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[[Category: Rost, B.]]
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[[Category: Janjua H]]
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[[Category: Woychik, N A.]]
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[[Category: Liu J]]
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[[Category: Xiao, R.]]
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[[Category: Ma LC]]
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[[Category: Zhao, L.]]
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[[Category: Montelione GT]]
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[[Category: Helix-turn-helix]]
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[[Category: Rost B]]
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[[Category: Nesg]]
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[[Category: Woychik NA]]
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[[Category: Northeast structural genomics consortium]]
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[[Category: Xiao R]]
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[[Category: Protein structure initiative]]
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[[Category: Zhao L]]
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[[Category: Psi-2]]
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[[Category: Structural genomic]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 15:53:17 2008''
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Current revision

Crystal structure of the bacterial antitoxin HigA from Escherichia coli at pH 8.5. Northeast Structural Genomics TARGET ER390.

PDB ID 2ict

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