1u5z

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(New page: 200px<br /><applet load="1u5z" size="450" color="white" frame="true" align="right" spinBox="true" caption="1u5z, resolution 2.40&Aring;" /> '''The Crystal structur...)
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[[Image:1u5z.gif|left|200px]]<br /><applet load="1u5z" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1u5z, resolution 2.40&Aring;" />
 
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'''The Crystal structure of murine APRIL, pH 8.5'''<br />
 
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==Overview==
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==The Crystal structure of murine APRIL, pH 8.5==
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A proliferation-inducing ligand (APRIL) is a TNF-like cytokine that, stimulates tumor cell growth. Within the TNF ligand superfamily, APRIL is, most similar to B-cell activation factor (BAFF) with which it shares 30%, sequence identity. APRIL binds the receptors B-cell maturation antigen, (BCMA) and TACI with high affinity; both of these receptors have also been, shown to bind BAFF, although BCMA has significantly higher affinity for, APRIL than BAFF. Determination of the crystal structure of APRIL from, three crystallization conditions at resolutions of 1.8-2.4A over a pH, range from 5.0 to 8.5 reveals a compact trimeric ligand with a backbone, fold very similar to that of BAFF (1.1A RMSD over 122 structurally, equivalent Calpha atoms), with the exception of differences in the AA' and, DE loop regions. Whereas BAFF has been shown to form 20-trimer assemblies, under certain conditions, the molecular determinants required for, BAFF-like assemblies are absent in the APRIL structure. No crystal packing, suggestive of the formation of higher-order assemblies is seen in any of, the crystal forms nor does the structure vary significantly between pH 5.0, and 8.5. Modeling of the APRIL-BCMA complex shows the resulting interface, is in agreement with mutagenesis data.
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<StructureSection load='1u5z' size='340' side='right'caption='[[1u5z]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1u5z]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1U5Z OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1U5Z FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1u5z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1u5z OCA], [https://pdbe.org/1u5z PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1u5z RCSB], [https://www.ebi.ac.uk/pdbsum/1u5z PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1u5z ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/TNF13_MOUSE TNF13_MOUSE]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/u5/1u5z_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1u5z ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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A proliferation-inducing ligand (APRIL) is a TNF-like cytokine that stimulates tumor cell growth. Within the TNF ligand superfamily, APRIL is most similar to B-cell activation factor (BAFF) with which it shares 30% sequence identity. APRIL binds the receptors B-cell maturation antigen (BCMA) and TACI with high affinity; both of these receptors have also been shown to bind BAFF, although BCMA has significantly higher affinity for APRIL than BAFF. Determination of the crystal structure of APRIL from three crystallization conditions at resolutions of 1.8-2.4A over a pH range from 5.0 to 8.5 reveals a compact trimeric ligand with a backbone fold very similar to that of BAFF (1.1A RMSD over 122 structurally equivalent Calpha atoms), with the exception of differences in the AA' and DE loop regions. Whereas BAFF has been shown to form 20-trimer assemblies under certain conditions, the molecular determinants required for BAFF-like assemblies are absent in the APRIL structure. No crystal packing suggestive of the formation of higher-order assemblies is seen in any of the crystal forms nor does the structure vary significantly between pH 5.0 and 8.5. Modeling of the APRIL-BCMA complex shows the resulting interface is in agreement with mutagenesis data.
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==About this Structure==
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The crystal structure of a proliferation-inducing ligand, APRIL.,Wallweber HJ, Compaan DM, Starovasnik MA, Hymowitz SG J Mol Biol. 2004 Oct 15;343(2):283-90. PMID:15451660<ref>PMID:15451660</ref>
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1U5Z is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus] with NI as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1U5Z OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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The crystal structure of a proliferation-inducing ligand, APRIL., Wallweber HJ, Compaan DM, Starovasnik MA, Hymowitz SG, J Mol Biol. 2004 Oct 15;343(2):283-90. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=15451660 15451660]
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</div>
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[[Category: Mus musculus]]
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<div class="pdbe-citations 1u5z" style="background-color:#fffaf0;"></div>
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[[Category: Single protein]]
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[[Category: Compaan, D.M.]]
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[[Category: Hymowitz, S.G.]]
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[[Category: Starovasnik, M.A.]]
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[[Category: Wallweber, H.J.]]
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[[Category: NI]]
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[[Category: cytokine]]
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[[Category: jelly-roll]]
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[[Category: tnfsf]]
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[[Category: trimer]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Wed Nov 21 03:52:17 2007''
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==See Also==
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*[[Tumor necrosis factor ligand superfamily 3D structures|Tumor necrosis factor ligand superfamily 3D structures]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Mus musculus]]
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[[Category: Compaan DM]]
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[[Category: Hymowitz SG]]
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[[Category: Starovasnik MA]]
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[[Category: Wallweber HJ]]

Current revision

The Crystal structure of murine APRIL, pH 8.5

PDB ID 1u5z

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