This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1zkd

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:11, 15 May 2024) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1zkd.png|left|200px]]
 
-
<!--
+
==X-Ray structure of the putative protein Q6N1P6 from Rhodopseudomonas palustris at the resolution 2.1 A , Northeast Structural Genomics Consortium target RpR58==
-
The line below this paragraph, containing "STRUCTURE_1zkd", creates the "Structure Box" on the page.
+
<StructureSection load='1zkd' size='340' side='right'caption='[[1zkd]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1zkd]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhodopseudomonas_palustris_CGA009 Rhodopseudomonas palustris CGA009]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZKD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1ZKD FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
{{STRUCTURE_1zkd| PDB=1zkd | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1zkd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zkd OCA], [https://pdbe.org/1zkd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1zkd RCSB], [https://www.ebi.ac.uk/pdbsum/1zkd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1zkd ProSAT], [https://www.topsan.org/Proteins/NESGC/1zkd TOPSAN]</span></td></tr>
-
 
+
</table>
-
===X-Ray structure of the putative protein Q6N1P6 from Rhodopseudomonas palustris at the resolution 2.1 A , Northeast Structural Genomics Consortium target RpR58===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/Q6N1P6_RHOPA Q6N1P6_RHOPA]
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
1ZKD is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Rhodopseudomonas_palustris_cga009 Rhodopseudomonas palustris cga009]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZKD OCA].
+
Check<jmol>
-
[[Category: Rhodopseudomonas palustris cga009]]
+
<jmolCheckbox>
-
[[Category: Acton, T.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zk/1zkd_consurf.spt"</scriptWhenChecked>
-
[[Category: Hunt, J F.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Kuzin, A P.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Ma, L.]]
+
</jmolCheckbox>
-
[[Category: Montelione, G.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1zkd ConSurf].
-
[[Category: NESG, Northeast Structural Genomics Consortium.]]
+
<div style="clear:both"></div>
-
[[Category: Tong, L.]]
+
__TOC__
-
[[Category: Vorobiev, S M.]]
+
</StructureSection>
-
[[Category: Xiao, R.]]
+
[[Category: Large Structures]]
-
[[Category: Yong, W.]]
+
[[Category: Rhodopseudomonas palustris CGA009]]
-
[[Category: Nesg]]
+
[[Category: Acton T]]
-
[[Category: Northeast structural genomics consortium]]
+
[[Category: Hunt JF]]
-
[[Category: Protein structure initiative]]
+
[[Category: Kuzin AP]]
-
[[Category: Psi]]
+
[[Category: Ma L]]
-
[[Category: Rpr58]]
+
[[Category: Montelione G]]
-
[[Category: Structural genomic]]
+
[[Category: Tong L]]
-
[[Category: X-ray]]
+
[[Category: Vorobiev SM]]
-
 
+
[[Category: Xiao R]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 16:20:00 2008''
+
[[Category: Yong W]]

Current revision

X-Ray structure of the putative protein Q6N1P6 from Rhodopseudomonas palustris at the resolution 2.1 A , Northeast Structural Genomics Consortium target RpR58

PDB ID 1zkd

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools