2r5f

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (01:23, 21 November 2024) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2r5f.png|left|200px]]
 
-
<!--
+
==Putative sugar-binding domain of transcriptional regulator DeoR from Pseudomonas syringae pv. tomato==
-
The line below this paragraph, containing "STRUCTURE_2r5f", creates the "Structure Box" on the page.
+
<StructureSection load='2r5f' size='340' side='right'caption='[[2r5f]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2r5f]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_syringae_pv._tomato_str._DC3000 Pseudomonas syringae pv. tomato str. DC3000]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2R5F OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2R5F FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
{{STRUCTURE_2r5f| PDB=2r5f | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2r5f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2r5f OCA], [https://pdbe.org/2r5f PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2r5f RCSB], [https://www.ebi.ac.uk/pdbsum/2r5f PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2r5f ProSAT], [https://www.topsan.org/Proteins/MCSG/2r5f TOPSAN]</span></td></tr>
-
 
+
</table>
-
===Putative sugar-binding domain of transcriptional regulator DeoR from Pseudomonas syringae pv. tomato===
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
==About this Structure==
+
<jmolCheckbox>
-
2R5F is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Pseudomonas_syringae_pv._tomato_str._dc3000 Pseudomonas syringae pv. tomato str. dc3000]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2R5F OCA].
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/r5/2r5f_consurf.spt"</scriptWhenChecked>
-
[[Category: Pseudomonas syringae pv. tomato str. dc3000]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-
[[Category: Clancy, S.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Cuff, M E.]]
+
</jmolCheckbox>
-
[[Category: Duggan, E.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2r5f ConSurf].
-
[[Category: Joachimiak, A.]]
+
<div style="clear:both"></div>
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
__TOC__
-
[[Category: Mcsg]]
+
</StructureSection>
-
[[Category: Midwest center for structural genomic]]
+
[[Category: Large Structures]]
-
[[Category: Pfam04198]]
+
[[Category: Pseudomonas syringae pv. tomato str. DC3000]]
-
[[Category: Protein structure initiative]]
+
[[Category: Clancy S]]
-
[[Category: Psi-2]]
+
[[Category: Cuff ME]]
-
[[Category: Structural genomic]]
+
[[Category: Duggan E]]
-
[[Category: Sugar-binding domain]]
+
[[Category: Joachimiak A]]
-
[[Category: Transcription regulator]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 16:43:13 2008''
+

Current revision

Putative sugar-binding domain of transcriptional regulator DeoR from Pseudomonas syringae pv. tomato

PDB ID 2r5f

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools