3dqp

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:55, 9 October 2024) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3dqp.png|left|200px]]
 
-
<!--
+
==Crystal structure of the oxidoreductase ylbE from Lactococcus lactis, Northeast Structural Genomics Consortium Target KR121.==
-
The line below this paragraph, containing "STRUCTURE_3dqp", creates the "Structure Box" on the page.
+
<StructureSection load='3dqp' size='340' side='right'caption='[[3dqp]], [[Resolution|resolution]] 1.40&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3dqp]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Lactococcus_lactis_subsp._lactis Lactococcus lactis subsp. lactis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DQP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DQP FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.4&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
{{STRUCTURE_3dqp| PDB=3dqp | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dqp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dqp OCA], [https://pdbe.org/3dqp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dqp RCSB], [https://www.ebi.ac.uk/pdbsum/3dqp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dqp ProSAT], [https://www.topsan.org/Proteins/NESGC/3dqp TOPSAN]</span></td></tr>
-
 
+
</table>
-
===Crystal structure of the oxidoreductase ylbE from Lactococcus lactis, Northeast Structural Genomics Consortium Target KR121.===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/Q9CGI7_LACLA Q9CGI7_LACLA]
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
3DQP is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Lactococcus_lactis_subsp._lactis Lactococcus lactis subsp. lactis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DQP OCA].
+
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dq/3dqp_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dqp ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
[[Category: Lactococcus lactis subsp. lactis]]
[[Category: Lactococcus lactis subsp. lactis]]
-
[[Category: Acton, T B]]
+
[[Category: Large Structures]]
-
[[Category: Ciccosanti, C.]]
+
[[Category: Acton TB]]
-
[[Category: Everett, J K.]]
+
[[Category: Ciccosanti C]]
-
[[Category: Foote, E L.]]
+
[[Category: Everett JK]]
-
[[Category: Forouhar, F.]]
+
[[Category: Foote EL]]
-
[[Category: Hunt, J F.]]
+
[[Category: Forouhar F]]
-
[[Category: Lee, D.]]
+
[[Category: Hunt JF]]
-
[[Category: Mao, L.]]
+
[[Category: Lee D]]
-
[[Category: Montelione, G T.]]
+
[[Category: Mao L]]
-
[[Category: NESG, Northeast Structural Genomics Consortium.]]
+
[[Category: Montelione GT]]
-
[[Category: Neely, H.]]
+
[[Category: Neely H]]
-
[[Category: Seetharaman, J.]]
+
[[Category: Seetharaman J]]
-
[[Category: Tong, L.]]
+
[[Category: Tong L]]
-
[[Category: Xiao, R.]]
+
[[Category: Xiao R]]
-
[[Category: Alpha-beta protein.]]
+
-
[[Category: Nesg]]
+
-
[[Category: Northeast structural genomics consortium]]
+
-
[[Category: Oxidoreductase]]
+
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi-2]]
+
-
[[Category: Structural genomic]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 16:54:59 2008''
+

Current revision

Crystal structure of the oxidoreductase ylbE from Lactococcus lactis, Northeast Structural Genomics Consortium Target KR121.

PDB ID 3dqp

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3dqp"
Personal tools