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3dkz

From Proteopedia

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{{Seed}}
 
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[[Image:3dkz.png|left|200px]]
 
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==Crystal structure of the Q7W9W5_BORPA protein from Bordetella parapertussis. Northeast Structural Genomics Consortium target BpR208C.==
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The line below this paragraph, containing "STRUCTURE_3dkz", creates the "Structure Box" on the page.
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<StructureSection load='3dkz' size='340' side='right'caption='[[3dkz]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3dkz]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/"acinetobacter_parapertussis"_(eldering_and_kendrick_1938)_steel_and_cowan_1964 "acinetobacter parapertussis" (eldering and kendrick 1938) steel and cowan 1964]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DKZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DKZ FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BPP1634 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=519 "Acinetobacter parapertussis" (Eldering and Kendrick 1938) Steel and Cowan 1964])</td></tr>
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{{STRUCTURE_3dkz| PDB=3dkz | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dkz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dkz OCA], [https://pdbe.org/3dkz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dkz RCSB], [https://www.ebi.ac.uk/pdbsum/3dkz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dkz ProSAT], [https://www.topsan.org/Proteins/NESGC/3dkz TOPSAN]</span></td></tr>
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</table>
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===Crystal structure of the Q7W9W5_BORPA protein from Bordetella parapertussis. Northeast Structural Genomics Consortium target BpR208C.===
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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==About this Structure==
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<jmolCheckbox>
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3DKZ is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Bordetella_parapertussis Bordetella parapertussis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DKZ OCA].
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dk/3dkz_consurf.spt"</scriptWhenChecked>
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[[Category: Bordetella parapertussis]]
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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[[Category: Acton, T B.]]
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<text>to colour the structure by Evolutionary Conservation</text>
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[[Category: Ciccosanti, C.]]
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</jmolCheckbox>
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[[Category: Foote, E L.]]
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dkz ConSurf].
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[[Category: Hunt, J F.]]
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<div style="clear:both"></div>
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[[Category: Mao, L.]]
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__TOC__
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[[Category: Montelione, G T.]]
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</StructureSection>
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[[Category: NESG, Northeast Structural Genomics Consortium.]]
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[[Category: Large Structures]]
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[[Category: Seetharaman, J.]]
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[[Category: Acton, T B]]
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[[Category: Su, M.]]
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[[Category: Ciccosanti, C]]
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[[Category: Tong, L.]]
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[[Category: Foote, E L]]
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[[Category: Vorobiev, S M.]]
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[[Category: Hunt, J F]]
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[[Category: Wang, D.]]
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[[Category: Mao, L]]
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[[Category: Xiao, R.]]
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[[Category: Montelione, G T]]
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[[Category: Structural genomic]]
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[[Category: Seetharaman, J]]
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[[Category: Su, M]]
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[[Category: Tong, L]]
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[[Category: Vorobiev, S M]]
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[[Category: Wang, D]]
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[[Category: Xiao, R]]
[[Category: Borpa]]
[[Category: Borpa]]
[[Category: Bpr208c]]
[[Category: Bpr208c]]
[[Category: Hydrolase]]
[[Category: Hydrolase]]
[[Category: Nesg]]
[[Category: Nesg]]
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[[Category: Northeast structural genomics consortium]]
 
[[Category: Pf03061]]
[[Category: Pf03061]]
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[[Category: Protein structure initiative]]
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[[Category: PSI, Protein structure initiative]]
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[[Category: Psi-2]]
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[[Category: Q7w9w5]]
[[Category: Q7w9w5]]
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[[Category: Structural genomic]]
 
[[Category: Thioesterase superfamily]]
[[Category: Thioesterase superfamily]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 17:02:58 2008''
 

Current revision

Crystal structure of the Q7W9W5_BORPA protein from Bordetella parapertussis. Northeast Structural Genomics Consortium target BpR208C.

PDB ID 3dkz

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