This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3crj

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:42, 2 February 2022) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3crj.png|left|200px]]
 
-
<!--
+
==Crystal structure of a TetR transcription regulator from Haloarcula marismortui ATCC 43049==
-
The line below this paragraph, containing "STRUCTURE_3crj", creates the "Structure Box" on the page.
+
<StructureSection load='3crj' size='340' side='right'caption='[[3crj]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3crj]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Halma Halma]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CRJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CRJ FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>
-
-->
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
{{STRUCTURE_3crj| PDB=3crj | SCENE= }}
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">tetR, pNG7308 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272569 HALMA])</td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3crj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3crj OCA], [https://pdbe.org/3crj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3crj RCSB], [https://www.ebi.ac.uk/pdbsum/3crj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3crj ProSAT], [https://www.topsan.org/Proteins/MCSG/3crj TOPSAN]</span></td></tr>
 +
</table>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cr/3crj_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3crj ConSurf].
 +
<div style="clear:both"></div>
-
===Crystal structure of a TetR transcription regulator from Haloarcula marismortui ATCC 43049===
+
==See Also==
-
 
+
*[[Tetracycline repressor protein 3D structures|Tetracycline repressor protein 3D structures]]
-
 
+
__TOC__
-
==About this Structure==
+
</StructureSection>
-
3CRJ is a 4 chains structure of sequences from [http://en.wikipedia.org/wiki/Haloarcula_marismortui_atcc_43049 Haloarcula marismortui atcc 43049]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CRJ OCA].
+
[[Category: Halma]]
-
[[Category: Haloarcula marismortui atcc 43049]]
+
[[Category: Large Structures]]
-
[[Category: Freeman, L.]]
+
[[Category: Freeman, L]]
-
[[Category: Joachimiak, A.]]
+
[[Category: Joachimiak, A]]
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
[[Category: Structural genomic]]
-
[[Category: Tan, K.]]
+
[[Category: Tan, K]]
-
[[Category: Zhou, M.]]
+
[[Category: Zhou, M]]
[[Category: Apc88200]]
[[Category: Apc88200]]
[[Category: Dna-binding]]
[[Category: Dna-binding]]
[[Category: Haloarcula marismortui atcc 43049]]
[[Category: Haloarcula marismortui atcc 43049]]
[[Category: Mcsg]]
[[Category: Mcsg]]
-
[[Category: Midwest center for structural genomic]]
+
[[Category: PSI, Protein structure initiative]]
-
[[Category: Plasmid]]
+
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi-2]]
+
-
[[Category: Structural genomic]]
+
[[Category: Tetr]]
[[Category: Tetr]]
[[Category: Transcription]]
[[Category: Transcription]]
[[Category: Transcription regulation]]
[[Category: Transcription regulation]]
[[Category: Transcription regulator]]
[[Category: Transcription regulator]]
- 
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 17:03:47 2008''
 

Current revision

Crystal structure of a TetR transcription regulator from Haloarcula marismortui ATCC 43049

PDB ID 3crj

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools