This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3bwv

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:52, 25 January 2023) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3bwv.png|left|200px]]
 
-
<!--
+
==Crystal structure of deoxyribonucleotidase-like protein (NP_764060.1) from Staphylococcus epidermidis ATCC 12228 at 1.55 A resolution==
-
The line below this paragraph, containing "STRUCTURE_3bwv", creates the "Structure Box" on the page.
+
<StructureSection load='3bwv' size='340' side='right'caption='[[3bwv]], [[Resolution|resolution]] 1.55&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3bwv]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Staphylococcus_epidermidis_ATCC_12228 Staphylococcus epidermidis ATCC 12228]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BWV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BWV FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bwv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bwv OCA], [https://pdbe.org/3bwv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bwv RCSB], [https://www.ebi.ac.uk/pdbsum/3bwv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bwv ProSAT], [https://www.topsan.org/Proteins/JCSG/3bwv TOPSAN]</span></td></tr>
-
{{STRUCTURE_3bwv| PDB=3bwv | SCENE= }}
+
</table>
-
 
+
== Function ==
-
===Crystal structure of deoxyribonucleotidase-like protein (NP_764060.1) from Staphylococcus epidermidis ATCC 12228 at 1.55 A resolution===
+
[https://www.uniprot.org/uniprot/53DR_STAES 53DR_STAES] Dephosphorylates the 5' and 2'(3')-phosphates of deoxyribonucleotides (Potential).
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
==About this Structure==
+
Check<jmol>
-
3BWV is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Staphylococcus_epidermidis_atcc_12228 Staphylococcus epidermidis atcc 12228]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BWV OCA].
+
<jmolCheckbox>
-
[[Category: Staphylococcus epidermidis atcc 12228]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bw/3bwv_consurf.spt"</scriptWhenChecked>
-
[[Category: JCSG, Joint Center for Structural Genomics.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Deoxyribonucleotidase-like protein]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Hydrolase]]
+
</jmolCheckbox>
-
[[Category: Jcsg]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3bwv ConSurf].
-
[[Category: Joint center for structural genomic]]
+
<div style="clear:both"></div>
-
[[Category: Np_764060 1]]
+
__TOC__
-
[[Category: Protein structure initiative]]
+
</StructureSection>
-
[[Category: Psi-2]]
+
[[Category: Large Structures]]
-
[[Category: Structural genomic]]
+
[[Category: Staphylococcus epidermidis ATCC 12228]]
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 17:06:52 2008''
+

Current revision

Crystal structure of deoxyribonucleotidase-like protein (NP_764060.1) from Staphylococcus epidermidis ATCC 12228 at 1.55 A resolution

PDB ID 3bwv

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3bwv"
Personal tools