This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2nwh

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (00:11, 28 December 2023) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2nwh.png|left|200px]]
 
-
<!--
+
==Carbohydrate kinase from Agrobacterium tumefaciens==
-
The line below this paragraph, containing "STRUCTURE_2nwh", creates the "Structure Box" on the page.
+
<StructureSection load='2nwh' size='340' side='right'caption='[[2nwh]], [[Resolution|resolution]] 1.86&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2nwh]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Agrobacterium_fabrum_str._C58 Agrobacterium fabrum str. C58]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NWH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2NWH FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.86&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-
{{STRUCTURE_2nwh| PDB=2nwh | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2nwh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nwh OCA], [https://pdbe.org/2nwh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2nwh RCSB], [https://www.ebi.ac.uk/pdbsum/2nwh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2nwh ProSAT], [https://www.topsan.org/Proteins/MCSG/2nwh TOPSAN]</span></td></tr>
-
 
+
</table>
-
===Carbohydrate kinase from Agrobacterium tumefaciens===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/A9CII5_AGRFC A9CII5_AGRFC]
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
2NWH is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Agrobacterium_tumefaciens Agrobacterium tumefaciens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NWH OCA].
+
Check<jmol>
-
[[Category: Agrobacterium tumefaciens]]
+
<jmolCheckbox>
-
[[Category: Edwards, A.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/nw/2nwh_consurf.spt"</scriptWhenChecked>
-
[[Category: Gu, J.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Joachimiak, A.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
</jmolCheckbox>
-
[[Category: Osipiuk, J.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2nwh ConSurf].
-
[[Category: Savchenko, A.]]
+
<div style="clear:both"></div>
-
[[Category: Xu, X.]]
+
__TOC__
-
[[Category: Apc6199]]
+
</StructureSection>
-
[[Category: Carbohydrate kinase]]
+
[[Category: Agrobacterium fabrum str. C58]]
-
[[Category: Mcsg]]
+
[[Category: Large Structures]]
-
[[Category: Midwest center for structural genomic]]
+
[[Category: Edwards A]]
-
[[Category: Protein structure initiative 2]]
+
[[Category: Gu J]]
-
[[Category: Psi-2]]
+
[[Category: Joachimiak A]]
-
[[Category: Structural genomic]]
+
[[Category: Osipiuk J]]
-
 
+
[[Category: Savchenko A]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 17:56:03 2008''
+
[[Category: Xu X]]

Current revision

Carbohydrate kinase from Agrobacterium tumefaciens

PDB ID 2nwh

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools