2bdr

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (05:06, 17 October 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2bdr.png|left|200px]]
 
-
<!--
+
==Crystal Structure of the Putative Ureidoglycolate hydrolase PP4288 from Pseudomonas putida, Northeast Structural Genomics Target PpR49==
-
The line below this paragraph, containing "STRUCTURE_2bdr", creates the "Structure Box" on the page.
+
<StructureSection load='2bdr' size='340' side='right'caption='[[2bdr]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2bdr]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_putida_KT2440 Pseudomonas putida KT2440]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BDR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2BDR FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-
{{STRUCTURE_2bdr| PDB=2bdr | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2bdr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bdr OCA], [https://pdbe.org/2bdr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2bdr RCSB], [https://www.ebi.ac.uk/pdbsum/2bdr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2bdr ProSAT], [https://www.topsan.org/Proteins/NESGC/2bdr TOPSAN]</span></td></tr>
-
 
+
</table>
-
===Crystal Structure of the Putative Ureidoglycolate hydrolase PP4288 from Pseudomonas putida, Northeast Structural Genomics Target PpR49===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/ALLA_PSEPK ALLA_PSEPK] Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the utilization of allantoin as nitrogen source (By similarity).[HAMAP-Rule:MF_00616]
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
2BDR is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Pseudomonas_putida Pseudomonas putida]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BDR OCA].
+
Check<jmol>
-
[[Category: Pseudomonas putida]]
+
<jmolCheckbox>
-
[[Category: Ureidoglycolate hydrolase]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bd/2bdr_consurf.spt"</scriptWhenChecked>
-
[[Category: Abashidze, M.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-
[[Category: Acton, T B.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Conover, K.]]
+
</jmolCheckbox>
-
[[Category: Forouhar, F.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2bdr ConSurf].
-
[[Category: Ho, C K.]]
+
<div style="clear:both"></div>
-
[[Category: Hunt, J F.]]
+
__TOC__
-
[[Category: Jayaraman, S.]]
+
</StructureSection>
-
[[Category: Montelione, G T.]]
+
[[Category: Large Structures]]
-
[[Category: NESG, Northeast Structural Genomics Consortium.]]
+
[[Category: Pseudomonas putida KT2440]]
-
[[Category: Tong, L.]]
+
[[Category: Abashidze M]]
-
[[Category: All beta protein]]
+
[[Category: Acton TB]]
-
[[Category: Nesg]]
+
[[Category: Conover K]]
-
[[Category: Northeast structural genomics consortium]]
+
[[Category: Forouhar F]]
-
[[Category: Protein structure initiative]]
+
[[Category: Ho CK]]
-
[[Category: Psi]]
+
[[Category: Hunt JF]]
-
[[Category: Structural genomic]]
+
[[Category: Jayaraman S]]
-
 
+
[[Category: Montelione GT]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 18:02:39 2008''
+
[[Category: Tong L]]

Current revision

Crystal Structure of the Putative Ureidoglycolate hydrolase PP4288 from Pseudomonas putida, Northeast Structural Genomics Target PpR49

PDB ID 2bdr

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools