3by5

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (01:39, 21 November 2024) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3by5.png|left|200px]]
 
-
<!--
+
==Crystal structure of cobalamin biosynthesis protein chiG from Agrobacterium tumefaciens str. C58==
-
The line below this paragraph, containing "STRUCTURE_3by5", creates the "Structure Box" on the page.
+
<StructureSection load='3by5' size='340' side='right'caption='[[3by5]], [[Resolution|resolution]] 2.52&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BY5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BY5 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.52&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
{{STRUCTURE_3by5| PDB=3by5 | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3by5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3by5 OCA], [https://pdbe.org/3by5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3by5 RCSB], [https://www.ebi.ac.uk/pdbsum/3by5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3by5 ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3by5 TOPSAN]</span></td></tr>
-
 
+
</table>
-
===Crystal structure of cobalamin biosynthesis protein chiG from Agrobacterium tumefaciens str. C58===
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
==About this Structure==
+
<jmolCheckbox>
-
3BY5 is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Agrobacterium_tumefaciens_str._c58 Agrobacterium tumefaciens str. c58]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BY5 OCA].
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/by/3by5_consurf.spt"</scriptWhenChecked>
-
[[Category: Agrobacterium tumefaciens str. c58]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-
[[Category: Almo, S C.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Bonanno, J B.]]
+
</jmolCheckbox>
-
[[Category: Burley, S K.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3by5 ConSurf].
-
[[Category: Iizuka, M.]]
+
<div style="clear:both"></div>
-
[[Category: Maletic, M.]]
+
__TOC__
-
[[Category: NYSGXRC, New York Structural GenomiX Research Consortium.]]
+
</StructureSection>
-
[[Category: Patskovsky, Y.]]
+
[[Category: Large Structures]]
-
[[Category: Rutter, M.]]
+
[[Category: Almo SC]]
-
[[Category: Sauder, J M.]]
+
[[Category: Bonanno JB]]
-
[[Category: Sojitra, S.]]
+
[[Category: Burley SK]]
-
[[Category: Wasserman, S R.]]
+
[[Category: Iizuka M]]
-
[[Category: Biosynthetic protein]]
+
[[Category: Maletic M]]
-
[[Category: Cobalamin biosynthesis protein]]
+
[[Category: Patskovsky Y]]
-
[[Category: New york structural genomix research consortium]]
+
[[Category: Rutter M]]
-
[[Category: Nysgxrc]]
+
[[Category: Sauder JM]]
-
[[Category: Protein structure initiative]]
+
[[Category: Sojitra S]]
-
[[Category: Psi-2]]
+
[[Category: Wasserman SR]]
-
[[Category: Structural genomic]]
+
-
[[Category: Uncharacterized protein]]
+
-
[[Category: Unknown function]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 18:06:55 2008''
+

Current revision

Crystal structure of cobalamin biosynthesis protein chiG from Agrobacterium tumefaciens str. C58

PDB ID 3by5

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3by5"
Personal tools