2gsw

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:04, 30 October 2024) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2gsw.png|left|200px]]
 
-
<!--
+
==Crystal Structure of the Putative NADPH-dependent Azobenzene FMN-Reductase YhdA from Bacillus subtilis, Northeast Structural Genomics Target SR135==
-
The line below this paragraph, containing "STRUCTURE_2gsw", creates the "Structure Box" on the page.
+
<StructureSection load='2gsw' size='340' side='right'caption='[[2gsw]], [[Resolution|resolution]] 2.92&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2gsw]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis_subsp._subtilis_str._168 Bacillus subtilis subsp. subtilis str. 168]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GSW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2GSW FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.92&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
{{STRUCTURE_2gsw| PDB=2gsw | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2gsw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gsw OCA], [https://pdbe.org/2gsw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2gsw RCSB], [https://www.ebi.ac.uk/pdbsum/2gsw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2gsw ProSAT], [https://www.topsan.org/Proteins/NESGC/2gsw TOPSAN]</span></td></tr>
-
 
+
</table>
-
===Crystal Structure of the Putative NADPH-dependent Azobenzene FMN-Reductase YhdA from Bacillus subtilis, Northeast Structural Genomics Target SR135===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/AZR_BACSU AZR_BACSU] Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADPH, but not NADH, as an electron donor for its activity.<ref>PMID:16752898</ref> <ref>PMID:16861800</ref>
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
2GSW is a 4 chains structure of sequences from [http://en.wikipedia.org/wiki/Bacillus_subtilis_subsp._subtilis_str._168 Bacillus subtilis subsp. subtilis str. 168]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GSW OCA].
+
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gs/2gsw_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2gsw ConSurf].
 +
<div style="clear:both"></div>
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
[[Category: Bacillus subtilis subsp. subtilis str. 168]]
[[Category: Bacillus subtilis subsp. subtilis str. 168]]
-
[[Category: Acton, T B.]]
+
[[Category: Large Structures]]
-
[[Category: Cooper, B.]]
+
[[Category: Acton TB]]
-
[[Category: Cunningham, K.]]
+
[[Category: Cooper B]]
-
[[Category: Forouhar, F.]]
+
[[Category: Cunningham K]]
-
[[Category: Hunt, J F.]]
+
[[Category: Forouhar F]]
-
[[Category: Hussain, M.]]
+
[[Category: Hunt JF]]
-
[[Category: Janjua, H.]]
+
[[Category: Hussain M]]
-
[[Category: Jayaraman, S.]]
+
[[Category: Janjua H]]
-
[[Category: Ma, L C.]]
+
[[Category: Jayaraman S]]
-
[[Category: Montelione, G T.]]
+
[[Category: Ma L-C]]
-
[[Category: NESG, Northeast Structural Genomics Consortium.]]
+
[[Category: Montelione GT]]
-
[[Category: Shen, J.]]
+
[[Category: Shen J]]
-
[[Category: Tong, L.]]
+
[[Category: Tong L]]
-
[[Category: Xiao, R.]]
+
[[Category: Xiao R]]
-
[[Category: Alpha-beta protein]]
+
-
[[Category: Nesg]]
+
-
[[Category: Northeast structural genomics consortium]]
+
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi]]
+
-
[[Category: Structural genomic]]
+
-
[[Category: Unknown function]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 18:10:00 2008''
+

Current revision

Crystal Structure of the Putative NADPH-dependent Azobenzene FMN-Reductase YhdA from Bacillus subtilis, Northeast Structural Genomics Target SR135

PDB ID 2gsw

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools