3d8d

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{{Seed}}
 
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[[Image:3d8d.png|left|200px]]
 
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==Crystal structure of the human Fe65-PTB1 domain==
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The line below this paragraph, containing "STRUCTURE_3d8d", creates the "Structure Box" on the page.
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<StructureSection load='3d8d' size='340' side='right'caption='[[3d8d]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3d8d]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D8D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3D8D FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=HG:MERCURY+(II)+ION'>HG</scene></td></tr>
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{{STRUCTURE_3d8d| PDB=3d8d | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3d8d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3d8d OCA], [https://pdbe.org/3d8d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3d8d RCSB], [https://www.ebi.ac.uk/pdbsum/3d8d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3d8d ProSAT]</span></td></tr>
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</table>
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===Crystal structure of the human Fe65-PTB1 domain===
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== Function ==
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[https://www.uniprot.org/uniprot/APBB1_HUMAN APBB1_HUMAN] Transcription coregulator that can have both coactivator and corepressor functions. Adapter protein that forms a transcriptionally active complex with the gamma-secretase-derived amyloid precursor protein (APP) intracellular domain. Plays a central role in the response to DNA damage by translocating to the nucleus and inducing apoptosis. May act by specifically recognizing and binding histone H2AX phosphorylated on 'Tyr-142' (H2AXY142ph) at double-strand breaks (DSBs), recruiting other pro-apoptosis factors such as MAPK8/JNK1. Required for histone H4 acetylation at double-strand breaks (DSBs). Its ability to specifically bind modified histones and chromatin modifying enzymes such as KAT5/TIP60, probably explains its trancription activation activity. Function in association with TSHZ3, SET and HDAC factors as a transcriptional repressor, that inhibits the expression of CASP4. Associates with chromatin in a region surrounding the CASP4 transcriptional start site(s).<ref>PMID:15031292</ref> <ref>PMID:18468999</ref> <ref>PMID:18922798</ref> <ref>PMID:19234442</ref> <ref>PMID:19343227</ref>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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The line below this paragraph, {{ABSTRACT_PUBMED_18550529}}, adds the Publication Abstract to the page
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Check<jmol>
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(as it appears on PubMed at http://www.pubmed.gov), where 18550529 is the PubMed ID number.
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d8/3d8d_consurf.spt"</scriptWhenChecked>
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{{ABSTRACT_PUBMED_18550529}}
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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==About this Structure==
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</jmolCheckbox>
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3D8D is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D8D OCA].
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3d8d ConSurf].
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<div style="clear:both"></div>
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==Reference==
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== References ==
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Crystal structure of the human Fe65-PTB1 domain., Radzimanowski J, Ravaud S, Schlesinger S, Koch J, Beyreuther K, Sinning I, Wild K, J Biol Chem. 2008 Aug 22;283(34):23113-20. Epub 2008 Jun 11. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18550529 18550529]
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<references/>
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__TOC__
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Mercury-induced crystallization and SAD phasing of the human Fe65-PTB1 domain., Radzimanowski J, Ravaud S, Beyreuther K, Sinning I, Wild K, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2008 May 1;64(Pt, 5):382-5. Epub 2008 Apr 5. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18453707 18453707]
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</StructureSection>
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
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[[Category: Single protein]]
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[[Category: Large Structures]]
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[[Category: Radzimanowski, J.]]
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[[Category: Radzimanowski J]]
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[[Category: Ravaud, S.]]
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[[Category: Ravaud S]]
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[[Category: Sinning, I.]]
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[[Category: Sinning I]]
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[[Category: Wild, K.]]
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[[Category: Wild K]]
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[[Category: Alpha-beta structure]]
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[[Category: Alternative splicing]]
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[[Category: Phosphotyrosine binding domain]]
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[[Category: Polymorphism]]
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[[Category: Protein binding]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Nov 19 20:11:06 2008''
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Current revision

Crystal structure of the human Fe65-PTB1 domain

PDB ID 3d8d

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