3bdk

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (14:44, 1 November 2023) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3bdk.jpg|left|200px]]
 
-
<!--
+
==Crystal Structure of Streptococcus suis mannonate dehydratase complexed with substrate analogue==
-
The line below this paragraph, containing "STRUCTURE_3bdk", creates the "Structure Box" on the page.
+
<StructureSection load='3bdk' size='340' side='right'caption='[[3bdk]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3bdk]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_suis Streptococcus suis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BDK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BDK FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DNO:D-MANNOSE'>DNO</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>
-
{{STRUCTURE_3bdk| PDB=3bdk | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bdk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bdk OCA], [https://pdbe.org/3bdk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bdk RCSB], [https://www.ebi.ac.uk/pdbsum/3bdk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bdk ProSAT]</span></td></tr>
-
 
+
</table>
-
===Crystal Structure of Streptococcus suis mannonate dehydratase complexed with substrate analogue===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/UXUA_STRSY UXUA_STRSY] Catalyzes the dehydration of D-mannonate (By similarity).
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
3BDK is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Streptococcus_suis Streptococcus suis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BDK OCA].
+
Check<jmol>
-
[[Category: Mannonate dehydratase]]
+
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bd/3bdk_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3bdk ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Streptococcus suis]]
[[Category: Streptococcus suis]]
-
[[Category: Gao, F.]]
+
[[Category: Gao F]]
-
[[Category: Gao, G F.]]
+
[[Category: Gao GF]]
-
[[Category: Liu, Y W.]]
+
[[Category: Liu YW]]
-
[[Category: Peng, H.]]
+
[[Category: Peng H]]
-
[[Category: Qi, J X.]]
+
[[Category: Qi JX]]
-
[[Category: Zhang, Q M.]]
+
[[Category: Zhang QM]]
-
[[Category: Lyase]]
+
-
[[Category: Xylose isomerase-like tim barrel]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Nov 20 07:40:01 2008''
+

Current revision

Crystal Structure of Streptococcus suis mannonate dehydratase complexed with substrate analogue

PDB ID 3bdk

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3bdk"
Personal tools