1uf2

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(New page: 200px<br /><applet load="1uf2" size="450" color="white" frame="true" align="right" spinBox="true" caption="1uf2, resolution 3.5&Aring;" /> '''The Atomic Structure ...)
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[[Image:1uf2.gif|left|200px]]<br /><applet load="1uf2" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1uf2, resolution 3.5&Aring;" />
 
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'''The Atomic Structure of Rice dwarf Virus (RDV)'''<br />
 
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==Overview==
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==The Atomic Structure of Rice dwarf Virus (RDV)==
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Rice dwarf virus (RDV), the causal agent of rice dwarf disease, is a, member of the genus Phytoreovirus in the family Reoviridae. RDV is a, double-shelled virus with a molecular mass of approximately 70 million, Dalton. This virus is widely prevalent and is one of the viruses that, cause the most economic damage in many Asian countries. The atomic, structure of RDV was determined at 3.5 A resolution by X-ray, crystallography. The double-shelled structure consists of two different, proteins, the core protein P3 and the outer shell protein P8. The atomic, structure shows structural and electrostatic complementarities between, both homologous (P3-P3 and P8-P8) and heterologous (P3-P8) interactions, as well as overall conformational changes found in P3-P3 dimer caused by, the insertion of amino-terminal loop regions of one of the P3 protein into, the other. These interactions suggest how the 900 protein components are, built into a higher-ordered virus core structure.
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<SX load='1uf2' size='340' side='right' viewer='molstar' caption='[[1uf2]], [[Resolution|resolution]] 3.50&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1uf2]] is a 16 chain structure with sequence from [https://en.wikipedia.org/wiki/Rice_dwarf_virus Rice dwarf virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UF2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1UF2 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.5&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1uf2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1uf2 OCA], [https://pdbe.org/1uf2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1uf2 RCSB], [https://www.ebi.ac.uk/pdbsum/1uf2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1uf2 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/P3_RDVA P3_RDVA] Capsid protein which self-assembles to form the inner icosahedral capsid with a T=2 symmetry, and consisting of 60 P3 dimers.<ref>PMID:14527391</ref>
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==About this Structure==
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==See Also==
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1UF2 is a [http://en.wikipedia.org/wiki/Protein_complex Protein complex] structure of sequences from [http://en.wikipedia.org/wiki/Rice_dwarf_virus Rice dwarf virus]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1UF2 OCA].
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*[[Virus coat proteins 3D structures|Virus coat proteins 3D structures]]
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== References ==
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==Reference==
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<references/>
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The atomic structure of rice dwarf virus reveals the self-assembly mechanism of component proteins., Nakagawa A, Miyazaki N, Taka J, Naitow H, Ogawa A, Fujimoto Z, Mizuno H, Higashi T, Watanabe Y, Omura T, Cheng RH, Tsukihara T, Structure. 2003 Oct;11(10):1227-38. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=14527391 14527391]
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__TOC__
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[[Category: Protein complex]]
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</SX>
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[[Category: Large Structures]]
[[Category: Rice dwarf virus]]
[[Category: Rice dwarf virus]]
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[[Category: Cheng, R.H.]]
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[[Category: Cheng RH]]
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[[Category: Fujimoto, Z.]]
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[[Category: Fujimoto Z]]
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[[Category: Higashi, T.]]
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[[Category: Higashi T]]
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[[Category: Miyazaki, N.]]
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[[Category: Miyazaki N]]
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[[Category: Mizuno, H.]]
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[[Category: Mizuno H]]
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[[Category: Naitow, H.]]
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[[Category: Naitow H]]
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[[Category: Nakagawa, A.]]
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[[Category: Nakagawa A]]
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[[Category: Ogawa, A.]]
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[[Category: Ogawa A]]
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[[Category: Omura, T.]]
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[[Category: Omura T]]
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[[Category: Taka, J.]]
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[[Category: Taka J]]
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[[Category: Tsukihara, T.]]
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[[Category: Tsukihara T]]
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[[Category: Watanabe, Y.]]
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[[Category: Watanabe Y]]
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[[Category: icosahedral virus]]
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[[Category: virus components]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Wed Nov 21 04:04:51 2007''
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Current revision

The Atomic Structure of Rice dwarf Virus (RDV)

1uf2, resolution 3.50Å

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