2bh0

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{{Seed}}
 
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[[Image:2bh0.png|left|200px]]
 
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==Crystal structure of a SeMet derivative of EXPA from Bacillus subtilis at 2.5 angstrom==
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The line below this paragraph, containing "STRUCTURE_2bh0", creates the "Structure Box" on the page.
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<StructureSection load='2bh0' size='340' side='right'caption='[[2bh0]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2bh0]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BH0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2BH0 FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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{{STRUCTURE_2bh0| PDB=2bh0 | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2bh0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bh0 OCA], [https://pdbe.org/2bh0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2bh0 RCSB], [https://www.ebi.ac.uk/pdbsum/2bh0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2bh0 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/YOAJ_BACSU YOAJ_BACSU] May promote colonization of plant roots. May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. Has very low expansin activity (in vitro). No enzymatic activity has been found. Binds to peptidoglycan and to plant cell walls.<ref>PMID:18971341</ref>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bh/2bh0_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2bh0 ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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We solved the crystal structure of a secreted protein, EXLX1, encoded by the yoaJ gene of Bacillus subtilis. Its structure is remarkably similar to that of plant beta-expansins (group 1 grass pollen allergens), consisting of 2 tightly packed domains (D1, D2) with a potential polysaccharide-binding surface spanning the 2 domains. Domain D1 has a double-psi beta-barrel fold with partial conservation of the catalytic site found in family 45 glycosyl hydrolases and in the MltA family of lytic transglycosylases. Domain D2 has an Ig-like fold similar to group 2/3 grass pollen allergens, with structural features similar to a type A carbohydrate-binding domain. EXLX1 bound to plant cell walls, cellulose, and peptidoglycan, but it lacked lytic activity against a variety of plant cell wall polysaccharides and peptidoglycan. EXLX1 promoted plant cell wall extension similar to, but 10 times weaker than, plant beta-expansins, which synergistically enhanced EXLX1 activity. Deletion of the gene encoding EXLX1 did not affect growth or peptidoglycan composition of B. subtilis in liquid medium, but slowed lysis upon osmotic shock and greatly reduced the ability of the bacterium to colonize maize roots. The presence of EXLX1 homologs in a small but diverse set of plant pathogens further supports a role in plant-bacterial interactions. Because plant expansins have proved difficult to express in active form in heterologous systems, the discovery of a bacterial homolog opens the door for detailed structural studies of expansin function.
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===CRYSTAL STRUCTURE OF A SEMET DERIVATIVE OF EXPA FROM BACILLUS SUBTILIS AT 2.5 ANGSTROM===
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Crystal structure and activity of Bacillus subtilis YoaJ (EXLX1), a bacterial expansin that promotes root colonization.,Kerff F, Amoroso A, Herman R, Sauvage E, Petrella S, Filee P, Charlier P, Joris B, Tabuchi A, Nikolaidis N, Cosgrove DJ Proc Natl Acad Sci U S A. 2008 Nov 4;105(44):16876-81. Epub 2008 Oct 29. PMID:18971341<ref>PMID:18971341</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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The line below this paragraph, {{ABSTRACT_PUBMED_18971341}}, adds the Publication Abstract to the page
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<div class="pdbe-citations 2bh0" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 18971341 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_18971341}}
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__TOC__
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</StructureSection>
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==About this Structure==
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2BH0 is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BH0 OCA].
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==Reference==
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Crystal structure and activity of Bacillus subtilis YoaJ (EXLX1), a bacterial expansin that promotes root colonization., Kerff F, Amoroso A, Herman R, Sauvage E, Petrella S, Filee P, Charlier P, Joris B, Tabuchi A, Nikolaidis N, Cosgrove DJ, Proc Natl Acad Sci U S A. 2008 Nov 4;105(44):16876-81. Epub 2008 Oct 29. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18971341 18971341]
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[[Category: Bacillus subtilis]]
[[Category: Bacillus subtilis]]
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[[Category: Charlier, P.]]
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[[Category: Large Structures]]
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[[Category: Filee, P.]]
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[[Category: Charlier P]]
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[[Category: Herman, R.]]
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[[Category: Filee P]]
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[[Category: Joris, B.]]
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[[Category: Herman R]]
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[[Category: Petrella, S.]]
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[[Category: Joris B]]
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[[Category: Sauvage, E.]]
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[[Category: Petrella S]]
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[[Category: Bacillus subtili]]
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[[Category: Sauvage E]]
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[[Category: Cell adhesion]]
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[[Category: Expansin related protein]]
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[[Category: Expansin]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Nov 20 07:50:46 2008''
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Current revision

Crystal structure of a SeMet derivative of EXPA from Bacillus subtilis at 2.5 angstrom

PDB ID 2bh0

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