1v4g

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(New page: 200px<br /><applet load="1v4g" size="450" color="white" frame="true" align="right" spinBox="true" caption="1v4g, resolution 2.50&Aring;" /> '''Crystal Structure of...)
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[[Image:1v4g.gif|left|200px]]<br /><applet load="1v4g" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1v4g, resolution 2.50&Aring;" />
 
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'''Crystal Structure of gamma-Glutamylcysteine Synthetase from Escherichia coli B'''<br />
 
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==Overview==
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==Crystal Structure of gamma-Glutamylcysteine Synthetase from Escherichia coli B==
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Gamma-glutamylcysteine synthetase (gammaGCS), a rate-limiting enzyme in, glutathione biosynthesis, plays a central role in glutathione homeostasis, and is a target for development of potential therapeutic agents against, parasites and cancer. We have determined the crystal structures of, Escherichia coli gammaGCS unliganded and complexed with a, sulfoximine-based transition-state analog inhibitor at resolutions of 2.5, and 2.1 A, respectively. In the crystal structure of the complex, the, bound inhibitor is phosphorylated at the sulfoximido nitrogen and is, coordinated to three Mg2+ ions. The cysteine-binding site was identified;, it is formed inductively at the transition state. In the unliganded, structure, an open space exists around the representative cysteine-binding, site and is probably responsible for the competitive binding of, glutathione. Upon inhibitor binding, the side chains of Tyr-241 and, Tyr-300 turn, forming a hydrogen-bonding triad with the carboxyl group of, the inhibitor's cysteine moiety, allowing this moiety to fit tightly into, the cysteine-binding site with concomitant accommodation of its side chain, into a shallow pocket. This movement is caused by a conformational change, of a switch loop (residues 240-249). Based on this crystal structure, the, cysteine-binding sites of mammalian and parasitic gammaGCSs were predicted, by multiple sequence alignment, although no significant sequence identity, exists between the E. coli gammaGCS and its eukaryotic homologues. The, identification of this cysteine-binding site provides important, information for the rational design of novel gammaGCS inhibitors.
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<StructureSection load='1v4g' size='340' side='right'caption='[[1v4g]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1v4g]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V4G OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1V4G FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FME:N-FORMYLMETHIONINE'>FME</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1v4g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v4g OCA], [https://pdbe.org/1v4g PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1v4g RCSB], [https://www.ebi.ac.uk/pdbsum/1v4g PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1v4g ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/GSH1_ECOLI GSH1_ECOLI]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/v4/1v4g_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1v4g ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Gamma-glutamylcysteine synthetase (gammaGCS), a rate-limiting enzyme in glutathione biosynthesis, plays a central role in glutathione homeostasis and is a target for development of potential therapeutic agents against parasites and cancer. We have determined the crystal structures of Escherichia coli gammaGCS unliganded and complexed with a sulfoximine-based transition-state analog inhibitor at resolutions of 2.5 and 2.1 A, respectively. In the crystal structure of the complex, the bound inhibitor is phosphorylated at the sulfoximido nitrogen and is coordinated to three Mg2+ ions. The cysteine-binding site was identified; it is formed inductively at the transition state. In the unliganded structure, an open space exists around the representative cysteine-binding site and is probably responsible for the competitive binding of glutathione. Upon inhibitor binding, the side chains of Tyr-241 and Tyr-300 turn, forming a hydrogen-bonding triad with the carboxyl group of the inhibitor's cysteine moiety, allowing this moiety to fit tightly into the cysteine-binding site with concomitant accommodation of its side chain into a shallow pocket. This movement is caused by a conformational change of a switch loop (residues 240-249). Based on this crystal structure, the cysteine-binding sites of mammalian and parasitic gammaGCSs were predicted by multiple sequence alignment, although no significant sequence identity exists between the E. coli gammaGCS and its eukaryotic homologues. The identification of this cysteine-binding site provides important information for the rational design of novel gammaGCS inhibitors.
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==About this Structure==
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Crystal structure of gamma-glutamylcysteine synthetase: insights into the mechanism of catalysis by a key enzyme for glutathione homeostasis.,Hibi T, Nii H, Nakatsu T, Kimura A, Kato H, Hiratake J, Oda J Proc Natl Acad Sci U S A. 2004 Oct 19;101(42):15052-7. Epub 2004 Oct 11. PMID:15477603<ref>PMID:15477603</ref>
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1V4G is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Active as [http://en.wikipedia.org/wiki/Glutamate--cysteine_ligase Glutamate--cysteine ligase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.3.2.2 6.3.2.2] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1V4G OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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Crystal structure of gamma-glutamylcysteine synthetase: insights into the mechanism of catalysis by a key enzyme for glutathione homeostasis., Hibi T, Nii H, Nakatsu T, Kimura A, Kato H, Hiratake J, Oda J, Proc Natl Acad Sci U S A. 2004 Oct 19;101(42):15052-7. Epub 2004 Oct 11. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=15477603 15477603]
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</div>
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<div class="pdbe-citations 1v4g" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
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[[Category: Glutamate--cysteine ligase]]
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[[Category: Large Structures]]
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[[Category: Single protein]]
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[[Category: Hibi T]]
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[[Category: Hibi, T.]]
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[[Category: Hiratake J]]
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[[Category: Hiratake, J.]]
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[[Category: Kato H]]
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[[Category: Kato, H.]]
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[[Category: Nakatsu T]]
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[[Category: Nakatsu, T.]]
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[[Category: Nii H]]
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[[Category: Nii, H.]]
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[[Category: Oda J]]
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[[Category: Oda, J.]]
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[[Category: beta barrel]]
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[[Category: glutathione regulation]]
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[[Category: peptide synthesis]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Wed Nov 21 04:26:03 2007''
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Current revision

Crystal Structure of gamma-Glutamylcysteine Synthetase from Escherichia coli B

PDB ID 1v4g

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