2v4n

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{{Seed}}
 
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[[Image:2v4n.jpg|left|200px]]
 
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==Crystal structure of Salmonella typhimurium SurE at 1.7 angstrom resolution in orthorhombic form==
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The line below this paragraph, containing "STRUCTURE_2v4n", creates the "Structure Box" on the page.
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<StructureSection load='2v4n' size='340' side='right'caption='[[2v4n]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2v4n]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._LT2 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V4N OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2V4N FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
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{{STRUCTURE_2v4n| PDB=2v4n | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2v4n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v4n OCA], [https://pdbe.org/2v4n PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2v4n RCSB], [https://www.ebi.ac.uk/pdbsum/2v4n PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2v4n ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/SURE_SALTY SURE_SALTY] Nucleotidase with a broad substrate specificity as it can dephosphorylate various ribo- and deoxyribonucleoside 5'-monophosphates and ribonucleoside 3'-monophosphates with highest affinity to 3'-AMP. Also hydrolyzes polyphosphate (exopolyphosphatase activity) with the preference for short-chain-length substrates (P20-25). Might be involved in the regulation of dNTP and NTP pools, and in the turnover of 3'-mononucleotides produced by numerous intracellular RNases (T1, T2, and F) during the degradation of various RNAs.[HAMAP-Rule:MF_00060]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/v4/2v4n_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2v4n ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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SurE, the stationary-phase survival protein of Salmonella typhimurium, forms part of a stress survival operon regulated by the stationary-phase RNA polymerase alternative sigma factor. SurE is known to improve bacterial viability during stress conditions. It functions as a phosphatase specific to nucleoside monophosphates. In the present study we reported the X-ray crystal structure of SurE from Salmonella typhimurium. The protein crystallized in two forms: orthorhombic F222; and monoclinic C2. The two structures were determined to resolutions of 1.7 and 2.7 A, respectively. The protein exists as a domain-swapped dimer. The residue D230 is involved in several interactions that are probably crucial for domain swapping. A divalent metal ion is found at the active site of the enzyme, which is consistent with the divalent metal ion-dependent activity of the enzyme. Interactions of the conserved DD motif present at the N-terminus with the phosphate and the Mg(2+) present in the active site suggest that these residues play an important role in enzyme activity. The divalent metal ion specificity and the kinetic constants of SurE were determined using the generic phosphatase substrate para-nitrophenyl phosphate. The enzyme was inactive in the absence of divalent cations and was most active in the presence of Mg(2+). Thermal denaturation studies showed that S. typhimurium SurE is much less stable than its homologues and an attempt was made to understand the molecular basis of the lower thermal stability based on solvation free-energy. This is the first detailed crystal structure analysis of SurE from a mesophilic organism.
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===CRYSTAL STRUCTURE OF SALMONELLA TYPHIMURIUM SURE AT 1.7 ANGSTROM RESOLUTION IN ORTHORHOMBIC FORM===
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Structural and functional studies on a mesophilic stationary phase survival protein (Sur E) from Salmonella typhimurium.,Pappachan A, Savithri HS, Murthy MR FEBS J. 2008 Dec;275(23):5855-64. PMID:19021761<ref>PMID:19021761</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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The line below this paragraph, {{ABSTRACT_PUBMED_19021761}}, adds the Publication Abstract to the page
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<div class="pdbe-citations 2v4n" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 19021761 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_19021761}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Large Structures]]
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2V4N is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Salmonella_typhimurium Salmonella typhimurium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V4N OCA].
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[[Category: Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]]
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[[Category: Anju P]]
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==Reference==
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[[Category: Murthy MRN]]
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Structural and functional studies on a mesophilic stationary phase survival protein (Sur E) from Salmonella typhimurium., Pappachan A, Savithri HS, Murthy MR, FEBS J. 2008 Dec;275(23):5855-64. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/19021761 19021761]
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[[Category: Savithri HS]]
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[[Category: Salmonella typhimurium]]
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[[Category: Anju, P.]]
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[[Category: Murthy, M R.N.]]
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[[Category: Savithri, H S.]]
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[[Category: Divalent metal ion]]
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[[Category: Domain swapping]]
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[[Category: Hydrolase]]
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[[Category: Mononucleotidase]]
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[[Category: Phosphatase]]
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[[Category: Rossmann fold]]
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[[Category: Stationary phase]]
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[[Category: Sur e]]
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[[Category: Survival protein]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Dec 10 14:53:31 2008''
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Current revision

Crystal structure of Salmonella typhimurium SurE at 1.7 angstrom resolution in orthorhombic form

PDB ID 2v4n

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