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3cdi

From Proteopedia

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{{Seed}}
 
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[[Image:3cdi.jpg|left|200px]]
 
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==Crystal structure of E. coli PNPase==
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The line below this paragraph, containing "STRUCTURE_3cdi", creates the "Structure Box" on the page.
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<StructureSection load='3cdi' size='340' side='right'caption='[[3cdi]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3cdi]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CDI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CDI FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.6&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3cdi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cdi OCA], [https://pdbe.org/3cdi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3cdi RCSB], [https://www.ebi.ac.uk/pdbsum/3cdi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3cdi ProSAT]</span></td></tr>
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{{STRUCTURE_3cdi| PDB=3cdi | SCENE= }}
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/PNP_ECOLI PNP_ECOLI] Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3'- to 5'-direction.[HAMAP-Rule:MF_01595]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cd/3cdi_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3cdi ConSurf].
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<div style="clear:both"></div>
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===Crystal structure of E. coli PNPase===
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==See Also==
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*[[Ribonuclease 3D structures|Ribonuclease 3D structures]]
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__TOC__
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<!--
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</StructureSection>
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The line below this paragraph, {{ABSTRACT_PUBMED_18812438}}, adds the Publication Abstract to the page
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(as it appears on PubMed at http://www.pubmed.gov), where 18812438 is the PubMed ID number.
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{{ABSTRACT_PUBMED_18812438}}
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==About this Structure==
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3CDI is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CDI OCA].
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==Reference==
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Crystal structure of Escherichia coli PNPase: central channel residues are involved in processive RNA degradation., Shi Z, Yang WZ, Lin-Chao S, Chak KF, Yuan HS, RNA. 2008 Nov;14(11):2361-71. Epub 2008 Sep 23. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18812438 18812438]
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[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
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[[Category: Polyribonucleotide nucleotidyltransferase]]
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[[Category: Large Structures]]
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[[Category: Chak, K F.]]
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[[Category: Chak KF]]
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[[Category: Lin-Chao, S.]]
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[[Category: Lin-Chao S]]
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[[Category: Shi, Z.]]
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[[Category: Shi Z]]
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[[Category: Yang, W Z.]]
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[[Category: Yang WZ]]
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[[Category: Yuan, H S.]]
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[[Category: Yuan HS]]
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[[Category: Crystal structure]]
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[[Category: Kinase]]
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[[Category: Mrna turnover]]
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[[Category: Polynucleotide phosphorylase]]
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[[Category: Rna degradation]]
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[[Category: Rnase]]
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[[Category: Transferase]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Dec 10 15:03:15 2008''
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Current revision

Crystal structure of E. coli PNPase

PDB ID 3cdi

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