3exm

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:36, 6 September 2023) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3exm.jpg|left|200px]]
 
-
<!--
+
==Crystal structure of the phosphatase SC4828 with the non-hydrolyzable nucleotide GPCP==
-
The line below this paragraph, containing "STRUCTURE_3exm", creates the "Structure Box" on the page.
+
<StructureSection load='3exm' size='340' side='right'caption='[[3exm]], [[Resolution|resolution]] 1.65&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3exm]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_coelicolor_A3(2) Streptomyces coelicolor A3(2)]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EXM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3EXM FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.65&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=GP2:PHOSPHOMETHYLPHOSPHONIC+ACID+GUANOSYL+ESTER'>GP2</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-
{{STRUCTURE_3exm| PDB=3exm | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3exm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3exm OCA], [https://pdbe.org/3exm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3exm RCSB], [https://www.ebi.ac.uk/pdbsum/3exm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3exm ProSAT]</span></td></tr>
-
 
+
</table>
-
===Crystal structure of the phosphatase SC4828 with the non-hydrolyzable nucleotide GPCP===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/Q9FBN7_STRCO Q9FBN7_STRCO]
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
3EXM is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Bacteria Bacteria]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EXM OCA].
+
Check<jmol>
-
[[Category: Bacteria]]
+
<jmolCheckbox>
-
[[Category: Nucleoside-diphosphatase]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ex/3exm_consurf.spt"</scriptWhenChecked>
-
[[Category: Edwards, A M.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Joachimiak, A.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
</jmolCheckbox>
-
[[Category: Savchenko, A.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3exm ConSurf].
-
[[Category: Singer, A U.]]
+
<div style="clear:both"></div>
-
[[Category: Xu, X.]]
+
__TOC__
-
[[Category: Yakunin, A F.]]
+
</StructureSection>
-
[[Category: Zheng, H.]]
+
[[Category: Large Structures]]
-
[[Category: Gdp/udp'ase]]
+
[[Category: Edwards AM]]
-
[[Category: Hydrolase]]
+
[[Category: Joachimiak A]]
-
[[Category: Lipocalcin fold]]
+
[[Category: Savchenko A]]
-
[[Category: Mcsg]]
+
[[Category: Singer AU]]
-
[[Category: Metalloprotein]]
+
[[Category: Xu X]]
-
[[Category: Midwest center for structural genomic]]
+
[[Category: Yakunin AF]]
-
[[Category: Non-hydrolysable gdp analogue]]
+
[[Category: Zheng H]]
-
[[Category: Nucleoside diphosphatase]]
+
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi-2]]
+
-
[[Category: Streptomyce]]
+
-
[[Category: Structural genomic]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Dec 10 15:08:06 2008''
+

Current revision

Crystal structure of the phosphatase SC4828 with the non-hydrolyzable nucleotide GPCP

PDB ID 3exm

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3exm"
Personal tools