3e07

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{{Seed}}
 
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[[Image:3e07.png|left|200px]]
 
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==Crystal structure of spatzle cystine knot==
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The line below this paragraph, containing "STRUCTURE_3e07", creates the "Structure Box" on the page.
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<StructureSection load='3e07' size='340' side='right'caption='[[3e07]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3e07]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Drosophila_melanogaster Drosophila melanogaster]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3E07 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3E07 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
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{{STRUCTURE_3e07| PDB=3e07 | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3e07 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3e07 OCA], [https://pdbe.org/3e07 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3e07 RCSB], [https://www.ebi.ac.uk/pdbsum/3e07 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3e07 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/SPZ_DROME SPZ_DROME] Component of the extracellular signaling pathway that establishes the dorsal-ventral pathway of the embryo. Three proteases; ndl, gd and snk process easter to create active easter. Active easter defines cell identities along the dorsal-ventral continuum by activating the spz ligand for the Tl receptor in the ventral region of the embryo. Spz C-106 in the hemolymph controls expression of the antifungal peptide Drosomycin (Drs) by acting as a ligand of Tl and inducing an intracellular signaling pathway.<ref>PMID:8124709</ref> <ref>PMID:11212919</ref> <ref>PMID:8808632</ref> <ref>PMID:12872120</ref>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/e0/3e07_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3e07 ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The Drosophila Spatzle protein, involved in the embryonic development of the dorsal-ventral axis and in the adult immune response, is expressed as a proprotein and is activated by the serine proteinases Easter or Spatzle-processing enzyme. Proteolytic cleavage generates a 106-amino acid COOH-terminal fragment, C106, homologous to the mature form of nerve growth factor NGF, a cystine knot protein. Through alternative splicing, the Spatzle gene encodes for several isoforms that (with one exception, the "propeptide isoform") share C106 but differ in the prosequence. Three isoforms have been expressed recombinantly in Escherichia coli strains. The propeptide isoform could be expressed in soluble form and is unstructured according to CD and NMR measurements. Dimeric full-length Spatzle isoforms have been refolded from insoluble inclusion bodies and are able to rescue Spatzle-deficient embryos. Although the two full-length isoforms exhibit similar far-UV CD spectra, large differences in tryptophan fluorescence quenching by the respective pro-parts are observed. Both full-length isoforms exhibited highly cooperative folding transitions. Proteolytic digestion using trypsin resulted in C106, whose unfolding exhibits lower thermodynamic stability and cooperativity compared with the full-length proteins. The structure of C106 reveals a T-shaped dimer with significant differences to NGF and a deep internal cavity. Substantial beta-sheet formation is observed between the two monomers, whereas a long loop containing the single tryptophan residue is disordered in the crystals. Our results suggest that the propeptides stabilize the tertiary structure of the "mature" Spatzle cystine knot.
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===Crystal structure of spatzle cystine knot===
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Biophysical characterization of refolded Drosophila Spatzle, a cystine knot protein, reveals distinct properties of three isoforms.,Hoffmann A, Funkner A, Neumann P, Juhnke S, Walther M, Schierhorn A, Weininger U, Balbach J, Reuter G, Stubbs MT J Biol Chem. 2008 Nov 21;283(47):32598-609. Epub 2008 Sep 12. PMID:18790733<ref>PMID:18790733</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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The line below this paragraph, {{ABSTRACT_PUBMED_18790733}}, adds the Publication Abstract to the page
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<div class="pdbe-citations 3e07" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 18790733 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_18790733}}
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__TOC__
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</StructureSection>
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==About this Structure==
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3E07 is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Drosophila_melanogaster Drosophila melanogaster]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3E07 OCA].
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==Reference==
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Biophysical Characterization of Refolded Drosophila Spatzle, a Cystine Knot Protein, Reveals Distinct Properties of Three Isoforms., Hoffmann A, Funkner A, Neumann P, Juhnke S, Walther M, Schierhorn A, Weininger U, Balbach J, Reuter G, Stubbs MT, J Biol Chem. 2008 Nov 21;283(47):32598-32609. Epub 2008 Sep 12. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18790733 18790733]
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[[Category: Drosophila melanogaster]]
[[Category: Drosophila melanogaster]]
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[[Category: Balbach, J.]]
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[[Category: Large Structures]]
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[[Category: Funkner, A.]]
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[[Category: Balbach J]]
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[[Category: Hoffmann, A.]]
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[[Category: Funkner A]]
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[[Category: Juhnke, S.]]
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[[Category: Hoffmann A]]
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[[Category: Neumann, P.]]
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[[Category: Juhnke S]]
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[[Category: Reuter, G.]]
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[[Category: Neumann P]]
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[[Category: Schierhorn, A.]]
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[[Category: Reuter G]]
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[[Category: Stubbs, M T.]]
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[[Category: Schierhorn A]]
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[[Category: Walther, M.]]
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[[Category: Stubbs MT]]
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[[Category: Weininger, U.]]
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[[Category: Walther M]]
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[[Category: Alternative splicing]]
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[[Category: Weininger U]]
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[[Category: Antimicrobial]]
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[[Category: Cystine knot]]
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[[Category: Cytokine]]
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[[Category: Developmental protein]]
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[[Category: Fungicide]]
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[[Category: Glycoprotein]]
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[[Category: Secreted]]
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[[Category: Toll ligand]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Dec 10 15:26:17 2008''
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Current revision

Crystal structure of spatzle cystine knot

PDB ID 3e07

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