2zds

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{{Seed}}
 
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[[Image:2zds.png|left|200px]]
 
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==Crystal Structure of SCO6571 from Streptomyces coelicolor A3(2)==
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The line below this paragraph, containing "STRUCTURE_2zds", creates the "Structure Box" on the page.
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<StructureSection load='2zds' size='340' side='right'caption='[[2zds]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2zds]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/"actinomyces_coelicolor"_(muller_1908)_lieske_1921 "actinomyces coelicolor" (muller 1908) lieske 1921]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZDS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ZDS FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">sco6571 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1902 "Actinomyces coelicolor" (Muller 1908) Lieske 1921])</td></tr>
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{{STRUCTURE_2zds| PDB=2zds | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2zds FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zds OCA], [https://pdbe.org/2zds PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2zds RCSB], [https://www.ebi.ac.uk/pdbsum/2zds PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2zds ProSAT]</span></td></tr>
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</table>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zd/2zds_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2zds ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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SCO6571 protein from Streptomyces coelicolor A3(2) was overexpressed and purified using Rhodococcus erythropolis as an expressing host. Crystals of selenomethionine-substituted SCO6571 have been obtained by vapor diffusion method. SCO6571 crystals diffract to 2.3 A and were found to belong to the orthorhombic space group P2(1)2(1)2(1) with unit cell parameters a = 84.5, b = 171.6, c = 184.8 A. Six molecules in the asymmetric unit give a crystal volume per protein mass (V(M)) of 2.97 A (3) Da(-1) and solvent content of 58.6 %. The structure was solved by the single wavelength anomalous diffraction (SAD) method. SCO6571 is a TIM-barrel fold protein that assembles into a hexameric molecule with D(3) symmetry.
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===Crystal Structure of SCO6571 from Streptomyces coelicolor A3(2)===
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Crystal structure of SCO6571 from Streptomyces coelicolor A3(2).,Begum P, Sakai N, Hayashi T, Gao YG, Tamura T, Watanabe N, Yao M, Tanaka I Protein Pept Lett. 2008;15(7):709-12. PMID:18782066<ref>PMID:18782066</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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The line below this paragraph, {{ABSTRACT_PUBMED_18782066}}, adds the Publication Abstract to the page
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<div class="pdbe-citations 2zds" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 18782066 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_18782066}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Large Structures]]
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2ZDS is a 6 chains structure of sequences from [http://en.wikipedia.org/wiki/Streptomyces_coelicolor Streptomyces coelicolor]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZDS OCA].
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[[Category: Begum, P]]
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[[Category: Gao, Y G]]
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==Reference==
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[[Category: Sakai, N]]
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Crystal structure of SCO6571 from Streptomyces coelicolor A3(2)., Begum P, Sakai N, Hayashi T, Gao YG, Tamura T, Watanabe N, Yao M, Tanaka I, Protein Pept Lett. 2008;15(7):709-12. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18782066 18782066]
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[[Category: Tanaka, I]]
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[[Category: Streptomyces coelicolor]]
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[[Category: Watanabe, N]]
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[[Category: Begum, P.]]
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[[Category: Yao, M]]
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[[Category: Gao, Y G.]]
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[[Category: Sakai, N.]]
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[[Category: Tanaka, I.]]
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[[Category: Watanabe, N.]]
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[[Category: Yao, M.]]
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[[Category: Dna binding protein]]
[[Category: Dna binding protein]]
[[Category: Dna-binding]]
[[Category: Dna-binding]]
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[[Category: Structural genomic]]
[[Category: Structural genomic]]
[[Category: Tim-barrel fold]]
[[Category: Tim-barrel fold]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Dec 10 15:50:34 2008''
 

Current revision

Crystal Structure of SCO6571 from Streptomyces coelicolor A3(2)

PDB ID 2zds

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