2q1k

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{{Seed}}
 
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[[Image:2q1k.png|left|200px]]
 
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==Cyrstal Structure of AscE from Aeromonas hydrophilla==
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The line below this paragraph, containing "STRUCTURE_2q1k", creates the "Structure Box" on the page.
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<StructureSection load='2q1k' size='340' side='right'caption='[[2q1k]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2q1k]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/"aeromonas_liquefaciens"_kluyver_and_van_niel_1936 "aeromonas liquefaciens" kluyver and van niel 1936]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Q1K OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2Q1K FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ascE ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=644 "Aeromonas liquefaciens" Kluyver and van Niel 1936])</td></tr>
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{{STRUCTURE_2q1k| PDB=2q1k | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2q1k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2q1k OCA], [https://pdbe.org/2q1k PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2q1k RCSB], [https://www.ebi.ac.uk/pdbsum/2q1k PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2q1k ProSAT]</span></td></tr>
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</table>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/q1/2q1k_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2q1k ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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In the type III secretion system (T3SS) of Aeromonas hydrophila, the putative needle complex subunit AscF requires both putative chaperones AscE and AscG for formation of a ternary complex to avoid premature assembly. Here we report the crystal structure of AscE at 2.7 A resolution and the mapping of buried regions of AscE, AscG, and AscF in the AscEG and AscEFG complexes using limited protease digestion. The dimeric AscE is comprised of two helix-turn-helix monomers packed in an antiparallel fashion. The N-terminal 13 residues of AscE are buried only upon binding with AscG, but this region is found to be nonessential for the interaction. AscE functions as a monomer and can be coexpressed with AscG or with both AscG and AscF to form soluble complexes. The AscE binding region of AscG in the AscEG complex is identified to be within the N-terminal 61 residues of AscG. The exposed C-terminal substrate-binding region of AscG in the AscEG complex is induced to be buried only upon binding to AscF. However, the N-terminal 52 residues of AscF remain exposed even in the ternary AscEFG complex. On the other hand, the 35-residue C-terminal region of AscF in the complex is resistant to protease digestion in the AscEFG complex. Site-directed mutagenesis showed that two C-terminal hydrophobic residues, Ile83 and Leu84, of AscF are essential for chaperone binding.
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===Cyrstal Structure of AscE from Aeromonas hydrophilla===
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Structure of AscE and induced burial regions in AscE and AscG upon formation of the chaperone needle-subunit complex of type III secretion system in Aeromonas hydrophila.,Tan YW, Yu HB, Leung KY, Sivaraman J, Mok YK Protein Sci. 2008 Oct;17(10):1748-60. Epub 2008 Jul 28. PMID:18662905<ref>PMID:18662905</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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The line below this paragraph, {{ABSTRACT_PUBMED_18662905}}, adds the Publication Abstract to the page
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<div class="pdbe-citations 2q1k" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 18662905 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_18662905}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Aeromonas liquefaciens kluyver and van niel 1936]]
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2Q1K is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Aeromonas_hydrophila Aeromonas hydrophila]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Q1K OCA].
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[[Category: Large Structures]]
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[[Category: Leung, K Y]]
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==Reference==
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[[Category: Mok, Y K]]
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Structure of AscE and induced burial regions in AscE and AscG upon formation of the chaperone needle-subunit complex of type III secretion system in Aeromonas hydrophila., Tan YW, Yu HB, Leung KY, Sivaraman J, Mok YK, Protein Sci. 2008 Oct;17(10):1748-60. Epub 2008 Jul 28. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18662905 18662905]
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[[Category: Sivaraman, J]]
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[[Category: Aeromonas hydrophila]]
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[[Category: Tan, Y W]]
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[[Category: Single protein]]
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[[Category: Yu, H B]]
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[[Category: Pdbx_ordinal=, <PDBx:audit_author.]]
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[[Category: Chaperone]]
[[Category: Chaperone]]
[[Category: Helix-turn-helix]]
[[Category: Helix-turn-helix]]
[[Category: Ttss]]
[[Category: Ttss]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Dec 10 20:16:59 2008''
 

Current revision

Cyrstal Structure of AscE from Aeromonas hydrophilla

PDB ID 2q1k

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