1vdi

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(New page: 200px<br /><applet load="1vdi" size="450" color="white" frame="true" align="right" spinBox="true" caption="1vdi" /> '''Solution structure of actin-binding domain o...)
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[[Image:1vdi.gif|left|200px]]<br /><applet load="1vdi" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1vdi" />
 
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'''Solution structure of actin-binding domain of troponin in Ca2+-free state'''<br />
 
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==Overview==
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==Solution structure of actin-binding domain of troponin in Ca2+-free state==
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Troponin and tropomyosin on actin filaments constitute a Ca2+-sensitive, switch that regulates the contraction of vertebrate striated muscle, through a series of conformational changes within the actin-based thin, filament. Troponin consists of three subunits: an inhibitory subunit, (TnI), a Ca2+-binding subunit (TnC), and a tropomyosin-binding subunit, (TnT). Ca2+-binding to TnC is believed to weaken interactions between, troponin and actin, and triggers a large conformational change of the, troponin complex. However, the atomic details of the actin-binding sites, of troponin have not been determined. Ternary troponin complexes have been, reconstituted from recombinant chicken skeletal TnI, TnC, and TnT2 (the, C-terminal region of TnT), among which only TnI was uniformly labelled, with 15N and/or 13C. By applying NMR spectroscopy, the solution structures, of a "mobile" actin-binding domain (approximately 6.1 kDa) in the troponin, ternary complex (approximately 52 kDa) were determined. The mobile domain, appears to tumble independently of the core domain of troponin., Ca2+-induced changes in the chemical shift and line shape suggested that, its tumbling was more restricted at high Ca2+ concentrations. The atomic, details of interactions between actin and the mobile domain of troponin, were defined by docking the mobile domain into the cryo-electron, microscopy (cryo-EM) density map of thin filament at low [Ca2+]. This, allowed the determination of the 3D position of residue 133 of TnI, which, has been an important landmark to incorporate the available information., This enabled unique docking of the entire globular head region of troponin, into the thin filament cryo-EM map at a low Ca2+ concentration. The, resultant atomic model suggests that troponin interacted electrostatically, with actin and caused the shift of tropomyosin to achieve muscle, relaxation. An important feature is that the coiled-coil region of, troponin pushed tropomyosin at a low Ca2+ concentration. Moreover, the, relationship between myosin and the mobile domain on actin filaments, suggests that the latter works as a fail-safe latch.
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<StructureSection load='1vdi' size='340' side='right'caption='[[1vdi]]' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1vdi]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VDI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VDI FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vdi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vdi OCA], [https://pdbe.org/1vdi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vdi RCSB], [https://www.ebi.ac.uk/pdbsum/1vdi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vdi ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/TNNI2_CHICK TNNI2_CHICK] Troponin I is the inhibitory subunit of troponin, the thin filament regulatory complex which confers calcium-sensitivity to striated muscle actomyosin ATPase activity.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vd/1vdi_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1vdi ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Troponin and tropomyosin on actin filaments constitute a Ca2+-sensitive switch that regulates the contraction of vertebrate striated muscle through a series of conformational changes within the actin-based thin filament. Troponin consists of three subunits: an inhibitory subunit (TnI), a Ca2+-binding subunit (TnC), and a tropomyosin-binding subunit (TnT). Ca2+-binding to TnC is believed to weaken interactions between troponin and actin, and triggers a large conformational change of the troponin complex. However, the atomic details of the actin-binding sites of troponin have not been determined. Ternary troponin complexes have been reconstituted from recombinant chicken skeletal TnI, TnC, and TnT2 (the C-terminal region of TnT), among which only TnI was uniformly labelled with 15N and/or 13C. By applying NMR spectroscopy, the solution structures of a "mobile" actin-binding domain (approximately 6.1 kDa) in the troponin ternary complex (approximately 52 kDa) were determined. The mobile domain appears to tumble independently of the core domain of troponin. Ca2+-induced changes in the chemical shift and line shape suggested that its tumbling was more restricted at high Ca2+ concentrations. The atomic details of interactions between actin and the mobile domain of troponin were defined by docking the mobile domain into the cryo-electron microscopy (cryo-EM) density map of thin filament at low [Ca2+]. This allowed the determination of the 3D position of residue 133 of TnI, which has been an important landmark to incorporate the available information. This enabled unique docking of the entire globular head region of troponin into the thin filament cryo-EM map at a low Ca2+ concentration. The resultant atomic model suggests that troponin interacted electrostatically with actin and caused the shift of tropomyosin to achieve muscle relaxation. An important feature is that the coiled-coil region of troponin pushed tropomyosin at a low Ca2+ concentration. Moreover, the relationship between myosin and the mobile domain on actin filaments suggests that the latter works as a fail-safe latch.
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==About this Structure==
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Structural basis for Ca2+-regulated muscle relaxation at interaction sites of troponin with actin and tropomyosin.,Murakami K, Yumoto F, Ohki SY, Yasunaga T, Tanokura M, Wakabayashi T J Mol Biol. 2005 Sep 9;352(1):178-201. PMID:16061251<ref>PMID:16061251</ref>
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1VDI is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1VDI OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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Structural basis for Ca2+-regulated muscle relaxation at interaction sites of troponin with actin and tropomyosin., Murakami K, Yumoto F, Ohki SY, Yasunaga T, Tanokura M, Wakabayashi T, J Mol Biol. 2005 Sep 9;352(1):178-201. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=16061251 16061251]
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</div>
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[[Category: Gallus gallus]]
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<div class="pdbe-citations 1vdi" style="background-color:#fffaf0;"></div>
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[[Category: Single protein]]
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[[Category: Murakami, K.]]
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[[Category: Ohki, S.]]
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[[Category: Tanokura, M.]]
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[[Category: Wakabayashi, T.]]
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[[Category: Yasunaga, T.]]
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[[Category: Yumoto, F.]]
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[[Category: actin]]
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[[Category: tropomyosin]]
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[[Category: troponin]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Wed Nov 21 04:36:13 2007''
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==See Also==
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*[[Troponin 3D structures|Troponin 3D structures]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Gallus gallus]]
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[[Category: Large Structures]]
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[[Category: Murakami K]]
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[[Category: Ohki S]]
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[[Category: Tanokura M]]
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[[Category: Wakabayashi T]]
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[[Category: Yasunaga T]]
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[[Category: Yumoto F]]

Current revision

Solution structure of actin-binding domain of troponin in Ca2+-free state

PDB ID 1vdi

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