2k3g

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:14, 30 October 2024) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2k3g.jpg|left|200px]]
 
-
<!--
+
==NMR structure analysis of a BMP receptor==
-
The line below this paragraph, containing "STRUCTURE_2k3g", creates the "Structure Box" on the page.
+
<StructureSection load='2k3g' size='340' side='right'caption='[[2k3g]]' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2k3g]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2K3G OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2K3G FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR, 21 models</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2k3g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2k3g OCA], [https://pdbe.org/2k3g PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2k3g RCSB], [https://www.ebi.ac.uk/pdbsum/2k3g PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2k3g ProSAT]</span></td></tr>
-
{{STRUCTURE_2k3g| PDB=2k3g | SCENE= }}
+
</table>
 +
== Disease ==
 +
[https://www.uniprot.org/uniprot/BMR1A_HUMAN BMR1A_HUMAN] Defects in BMPR1A are a cause of juvenile polyposis syndrome (JPS) [MIM:[https://omim.org/entry/174900 174900]; also known as juvenile intestinal polyposis (JIP). JPS is an autosomal dominant gastrointestinal hamartomatous polyposis syndrome in which patients are at risk for developing gastrointestinal cancers. The lesions are typified by a smooth histological appearance, predominant stroma, cystic spaces and lack of a smooth muscle core. Multiple juvenile polyps usually occur in a number of Mendelian disorders. Sometimes, these polyps occur without associated features as in JPS; here, polyps tend to occur in the large bowel and are associated with an increased risk of colon and other gastrointestinal cancers.<ref>PMID:11381269</ref> <ref>PMID:11536076</ref> <ref>PMID:12417513</ref> <ref>PMID:12136244</ref> <ref>PMID:12630959</ref> Defects in BMPR1A are a cause of Cowden disease (CD) [MIM:[https://omim.org/entry/158350 158350]. CD is an autosomal dominant cancer syndrome characterized by multiple hamartomas and by a high risk for breast, thyroid and endometrial cancers.<ref>PMID:11381269</ref> <ref>PMID:11536076</ref> Defects in BMPR1A are the cause of hereditary mixed polyposis syndrome 2 (HMPS2) [MIM:[https://omim.org/entry/610069 610069]. Hereditary mixed polyposis syndrome (HMPS) is characterized by atypical juvenile polyps, colonic adenomas, and colorectal carcinomas.<ref>PMID:11381269</ref> Note=A microdeletion of chromosome 10q23 involving BMPR1A and PTEN is a cause of chromosome 10q23 deletion syndrome, which shows overlapping features of the following three disorders: Bannayan-Zonana syndrome, Cowden disease and juvenile polyposis syndrome.<ref>PMID:11381269</ref>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/BMR1A_HUMAN BMR1A_HUMAN] On ligand binding, forms a receptor complex consisting of two type II and two type I transmembrane serine/threonine kinases. Type II receptors phosphorylate and activate type I receptors which autophosphorylate, then bind and activate SMAD transcriptional regulators. Receptor for BMP-2 and BMP-4.
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
The structure of the extracellular domain of BMP receptor IA was determined in solution by NMR spectroscopy and compared to its structure when bound to its ligand BMP-2. While most parts of the secondary structure are highly conserved between the bound and unbound forms, large conformational rearrangements can be observed in the beta4beta5 loop of BMPR-IA, which is in contact with BMP-2 and harbors the main binding determinants for the BMPR-IA-BMP-2 interaction. In its unbound form, helix alpha1 in BMPR-IA, which is in the center of the binding epitope for BMP-2, is missing. Since BMP-2 also shows conformational changes in the type I receptor epitope upon binding to BMPR-IA, both binding partners pass through an induced fit mechanism to adapt their binding interfaces to a given interaction surface. The inherent flexibility of both partners possibly explains the promiscuous ligand-receptor interaction observed in the BMP protein superfamily.
-
===NMR structure analysis of a BMP receptor===
+
The solution structure of BMPR-IA reveals a local disorder-to-order transition upon BMP-2 binding.,Klages J, Kotzsch A, Coles M, Sebald W, Nickel J, Muller T, Kessler H Biochemistry. 2008 Nov 18;47(46):11930-9. Epub 2008 Oct 21. PMID:18937504<ref>PMID:18937504</ref>
-
 
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
<!--
+
</div>
-
The line below this paragraph, {{ABSTRACT_PUBMED_18937504}}, adds the Publication Abstract to the page
+
<div class="pdbe-citations 2k3g" style="background-color:#fffaf0;"></div>
-
(as it appears on PubMed at http://www.pubmed.gov), where 18937504 is the PubMed ID number.
+
== References ==
-
-->
+
<references/>
-
{{ABSTRACT_PUBMED_18937504}}
+
__TOC__
-
 
+
</StructureSection>
-
==About this Structure==
+
-
2K3G is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2K3G OCA].
+
-
 
+
-
==Reference==
+
-
The solution structure of BMPR-IA reveals a local disorder-to-order transition upon BMP-2 binding., Klages J, Kotzsch A, Coles M, Sebald W, Nickel J, Muller T, Kessler H, Biochemistry. 2008 Nov 18;47(46):11930-9. Epub 2008 Oct 21. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18937504 18937504]
+
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
-
[[Category: Receptor protein serine/threonine kinase]]
+
[[Category: Large Structures]]
-
[[Category: Kessler, H.]]
+
[[Category: Kessler H]]
-
[[Category: Klages, J.]]
+
[[Category: Klages J]]
-
[[Category: Kotzsch, A.]]
+
[[Category: Kotzsch A]]
-
[[Category: Mueller, T.]]
+
[[Category: Mueller T]]
-
[[Category: Atp-binding]]
+
-
[[Category: Bmp]]
+
-
[[Category: Disease mutation]]
+
-
[[Category: Glycoprotein]]
+
-
[[Category: Kinase]]
+
-
[[Category: Magnesium]]
+
-
[[Category: Manganese]]
+
-
[[Category: Membrane]]
+
-
[[Category: Metal-binding]]
+
-
[[Category: Nmr structure]]
+
-
[[Category: Nucleotide-binding]]
+
-
[[Category: Phosphoprotein]]
+
-
[[Category: Polymorphism]]
+
-
[[Category: Receptor]]
+
-
[[Category: Serine/threonine-protein kinase]]
+
-
[[Category: Signaling protein]]
+
-
[[Category: Tgf-beta superfamily]]
+
-
[[Category: Transferase]]
+
-
[[Category: Transmembrane]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Dec 17 13:12:04 2008''
+

Current revision

NMR structure analysis of a BMP receptor

PDB ID 2k3g

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools