This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3fdx

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (00:31, 28 December 2023) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3fdx.jpg|left|200px]]
 
-
<!--
+
==Putative filament protein / universal stress protein F from Klebsiella pneumoniae.==
-
The line below this paragraph, containing "STRUCTURE_3fdx", creates the "Structure Box" on the page.
+
<StructureSection load='3fdx' size='340' side='right'caption='[[3fdx]], [[Resolution|resolution]] 1.58&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3fdx]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Klebsiella_pneumoniae_subsp._pneumoniae_MGH_78578 Klebsiella pneumoniae subsp. pneumoniae MGH 78578]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FDX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3FDX FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.58&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
{{STRUCTURE_3fdx| PDB=3fdx | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3fdx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3fdx OCA], [https://pdbe.org/3fdx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3fdx RCSB], [https://www.ebi.ac.uk/pdbsum/3fdx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3fdx ProSAT], [https://www.topsan.org/Proteins/MCSG/3fdx TOPSAN]</span></td></tr>
-
 
+
</table>
-
===Putative filament protein / universal stress protein F from Klebsiella pneumoniae.===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/A6T8F5_KLEP7 A6T8F5_KLEP7]
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
3FDX is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Klebsiella_pneumoniae_subsp._pneumoniae_mgh_78578 Klebsiella pneumoniae subsp. pneumoniae mgh 78578]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FDX OCA].
+
Check<jmol>
-
[[Category: Klebsiella pneumoniae subsp. pneumoniae mgh 78578]]
+
<jmolCheckbox>
-
[[Category: Bearden, J.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fd/3fdx_consurf.spt"</scriptWhenChecked>
-
[[Category: Joachimiak, A.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Osipiuk, J.]]
+
</jmolCheckbox>
-
[[Category: Volkart, L.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3fdx ConSurf].
-
[[Category: Apc60640 1]]
+
<div style="clear:both"></div>
-
[[Category: Filament protein]]
+
__TOC__
-
[[Category: Mcsg]]
+
</StructureSection>
-
[[Category: Midwest center for structural genomic]]
+
[[Category: Klebsiella pneumoniae subsp. pneumoniae MGH 78578]]
-
[[Category: Protein structure initiative]]
+
[[Category: Large Structures]]
-
[[Category: Psi-2]]
+
[[Category: Bearden J]]
-
[[Category: Structural genomic]]
+
[[Category: Joachimiak A]]
-
[[Category: Universal stress protein f]]
+
[[Category: Osipiuk J]]
-
[[Category: Unknown function]]
+
[[Category: Volkart L]]
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Dec 17 13:48:27 2008''
+

Current revision

Putative filament protein / universal stress protein F from Klebsiella pneumoniae.

PDB ID 3fdx

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools