This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
2w5n
From Proteopedia
(Difference between revisions)
(New page: '''Unreleased structure''' The entry 2w5n is ON HOLD until Paper Publication Authors: CARAPITO, R., IMBERTY, A., JELTSCH, J.M., BYRNS, S.C., TAM, P.H., LOWARY, T.L., VARROT, A., PHALIP,...) |
|||
| (15 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | '''Unreleased structure''' | ||
| - | + | ==Native structure of the GH93 alpha-L-arabinofuranosidase of Fusarium graminearum== | |
| + | <StructureSection load='2w5n' size='340' side='right'caption='[[2w5n]], [[Resolution|resolution]] 1.85Å' scene=''> | ||
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[2w5n]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Fusarium_graminearum Fusarium graminearum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2W5N OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2W5N FirstGlance]. <br> | ||
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.85Å</td></tr> | ||
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2w5n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2w5n OCA], [https://pdbe.org/2w5n PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2w5n RCSB], [https://www.ebi.ac.uk/pdbsum/2w5n PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2w5n ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/I1RH17_GIBZE I1RH17_GIBZE] | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/w5/2w5n_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2w5n ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| - | + | ==See Also== | |
| - | + | *[[Arabinanase 3D structures|Arabinanase 3D structures]] | |
| - | + | __TOC__ | |
| - | + | </StructureSection> | |
| - | + | [[Category: Fusarium graminearum]] | |
| + | [[Category: Large Structures]] | ||
| + | [[Category: Byrns SC]] | ||
| + | [[Category: Carapito R]] | ||
| + | [[Category: Imberty A]] | ||
| + | [[Category: Jeltsch JM]] | ||
| + | [[Category: Lowary TL]] | ||
| + | [[Category: Phalip V]] | ||
| + | [[Category: Tam PH]] | ||
| + | [[Category: Varrot A]] | ||
Current revision
Native structure of the GH93 alpha-L-arabinofuranosidase of Fusarium graminearum
| |||||||||||
Categories: Fusarium graminearum | Large Structures | Byrns SC | Carapito R | Imberty A | Jeltsch JM | Lowary TL | Phalip V | Tam PH | Varrot A
