This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2rno

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:05, 1 May 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2rno.jpg|left|200px]]
 
-
<!--
+
==Solution Structure of the N-terminal SAP Domain of SUMO E3 Ligases from Oryza sativa==
-
The line below this paragraph, containing "STRUCTURE_2rno", creates the "Structure Box" on the page.
+
<StructureSection load='2rno' size='340' side='right'caption='[[2rno]]' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2rno]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Oryza_sativa_Japonica_Group Oryza sativa Japonica Group]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RNO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2RNO FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2rno FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rno OCA], [https://pdbe.org/2rno PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2rno RCSB], [https://www.ebi.ac.uk/pdbsum/2rno PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2rno ProSAT]</span></td></tr>
-
{{STRUCTURE_2rno| PDB=2rno | SCENE= }}
+
</table>
-
 
+
== Function ==
-
===Solution Structure of the N-terminal SAP Domain of SUMO E3 Ligases from Oryza sativa===
+
[https://www.uniprot.org/uniprot/SIZ1_ORYSJ SIZ1_ORYSJ] Probable SUMO E3 ligase that may regulate Pi starvation responses (By similarity).
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
<!--
+
Check<jmol>
-
The line below this paragraph, {{ABSTRACT_PUBMED_18831036}}, adds the Publication Abstract to the page
+
<jmolCheckbox>
-
(as it appears on PubMed at http://www.pubmed.gov), where 18831036 is the PubMed ID number.
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rn/2rno_consurf.spt"</scriptWhenChecked>
-
-->
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
{{ABSTRACT_PUBMED_18831036}}
+
<text>to colour the structure by Evolutionary Conservation</text>
-
 
+
</jmolCheckbox>
-
==About this Structure==
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2rno ConSurf].
-
2RNO is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Oryza_sativa_japonica_group Oryza sativa japonica group]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RNO OCA].
+
<div style="clear:both"></div>
-
 
+
__TOC__
-
==Reference==
+
</StructureSection>
-
Solution structures and DNA binding properties of the N-terminal SAP domains of SUMO E3 ligases from Saccharomyces cerevisiae and Oryza sativa., Suzuki R, Shindo H, Tase A, Kikuchi Y, Shimizu M, Yamazaki T, Proteins. 2008 Sep 2. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18831036 18831036]
+
[[Category: Large Structures]]
-
[[Category: Oryza sativa japonica group]]
+
[[Category: Oryza sativa Japonica Group]]
-
[[Category: Shindo, H.]]
+
[[Category: Shindo H]]
-
[[Category: Tase, A.]]
+
[[Category: Suzuki R]]
-
[[Category: Dna binding]]
+
[[Category: Tase A]]
-
[[Category: Dna-binding]]
+
[[Category: Yamazaki T]]
-
[[Category: Metal-binding]]
+
-
[[Category: Sumo ligase]]
+
-
[[Category: Sumoylation]]
+
-
[[Category: Zinc]]
+
-
[[Category: Zinc-finger]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Dec 31 10:08:22 2008''
+

Current revision

Solution Structure of the N-terminal SAP Domain of SUMO E3 Ligases from Oryza sativa

PDB ID 2rno

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2rno"
Personal tools