3ex9

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{{Seed}}
 
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[[Image:3ex9.jpg|left|200px]]
 
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==Crystal structure of PhzA/B from Burkholderia cepacia R18194 crystallized in C2221==
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The line below this paragraph, containing "STRUCTURE_3ex9", creates the "Structure Box" on the page.
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<StructureSection load='3ex9' size='340' side='right'caption='[[3ex9]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3ex9]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Burkholderia_lata Burkholderia lata]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EX9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3EX9 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ex9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ex9 OCA], [https://pdbe.org/3ex9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ex9 RCSB], [https://www.ebi.ac.uk/pdbsum/3ex9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ex9 ProSAT]</span></td></tr>
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{{STRUCTURE_3ex9| PDB=3ex9 | SCENE= }}
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/Q396C9_BURL3 Q396C9_BURL3]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ex/3ex9_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3ex9 ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Phenazines are redox-active bacterial secondary metabolites that participate in important biological processes such as the generation of toxic reactive oxygen species and the reduction of environmental iron. Their biosynthesis from chorismic acid depends on enzymes encoded by the phz operon, but many details of the pathway remain unclear. It previously was shown that phenazine biosynthesis involves the symmetrical head-to-tail double condensation of two identical amino-cyclohexenone molecules to a tricyclic phenazine precursor. While this key step can proceed spontaneously in vitro, we show here that it is catalyzed by PhzA/B, a small dimeric protein of the Delta(5)-3-ketosteroid isomerase/nuclear transport factor 2 family, and we reason that this catalysis is required in vivo. Crystal structures in complex with analogues of the substrate and product suggest that PhzA/B accelerates double imine formation by orienting two substrate molecules and by neutralizing the negative charge of tetrahedral intermediates through protonation. HPLC-coupled NMR reveals that the condensation product rearranges further, which is probably important to prevent back-hydrolysis, and may also be catalyzed within the active site of PhzA/B. The rearranged tricyclic product subsequently undergoes oxidative decarboxylation in a metal-independent reaction involving molecular oxygen. This conversion does not seem to require enzymatic catalysis, explaining why phenazine-1-carboxylic acid is a major product even in strains that use phenazine-1,6-dicarboxylic acid as a precursor of strain-specific phenazine derivatives.
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===Crystal structure of PhzA/B from Burkholderia cepacia R18194 crystallized in C2221===
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PhzA/B catalyzes the formation of the tricycle in phenazine biosynthesis.,Ahuja EG, Janning P, Mentel M, Graebsch A, Breinbauer R, Hiller W, Costisella B, Thomashow LS, Mavrodi DV, Blankenfeldt W J Am Chem Soc. 2008 Dec 17;130(50):17053-61. PMID:19053436<ref>PMID:19053436</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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The line below this paragraph, {{ABSTRACT_PUBMED_19053436}}, adds the Publication Abstract to the page
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<div class="pdbe-citations 3ex9" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 19053436 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_19053436}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Burkholderia lata]]
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3EX9 is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Burkholderia_sp. Burkholderia sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EX9 OCA].
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[[Category: Large Structures]]
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[[Category: Ahuja EG]]
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==Reference==
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[[Category: Blankenfeldt W]]
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PhzA/B catalyzes the formation of the tricycle in phenazine biosynthesis., Ahuja EG, Janning P, Mentel M, Graebsch A, Breinbauer R, Hiller W, Costisella B, Thomashow LS, Mavrodi DV, Blankenfeldt W, J Am Chem Soc. 2008 Dec 17;130(50):17053-61. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/19053436 19053436]
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[[Category: Burkholderia sp.]]
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[[Category: Ahuja, E G.]]
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[[Category: Blankenfeldt, W.]]
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[[Category: Biosynthetic protein]]
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[[Category: Ksi]]
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[[Category: Phenazine biosynthesis]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Dec 31 10:34:41 2008''
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Current revision

Crystal structure of PhzA/B from Burkholderia cepacia R18194 crystallized in C2221

PDB ID 3ex9

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