2w3z

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:07, 9 May 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2w3z.png|left|200px]]
 
-
<!--
+
==Structure of a Streptococcus mutans CE4 esterase==
-
The line below this paragraph, containing "STRUCTURE_2w3z", creates the "Structure Box" on the page.
+
<StructureSection load='2w3z' size='340' side='right'caption='[[2w3z]], [[Resolution|resolution]] 1.45&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2w3z]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_mutans_UA159 Streptococcus mutans UA159]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2W3Z OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2W3Z FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.45&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
{{STRUCTURE_2w3z| PDB=2w3z | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2w3z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2w3z OCA], [https://pdbe.org/2w3z PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2w3z RCSB], [https://www.ebi.ac.uk/pdbsum/2w3z PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2w3z ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q8DV82_STRMU Q8DV82_STRMU]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/w3/2w3z_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2w3z ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
The genome sequence of the oral pathogen Streptococcus mutans, predicts the presence of two putative polysaccharide deacetylases. The first, designated PgdA in this paper, shows homology to the catalytic domains of peptidoglycan deacetylases from Streptococcus pneumoniae and Listeria monocytogenes, that are both thought to be involved in the bacterial defense mechanism against human mucosal lysozyme, and are part of the CAZY family 4 carbohydrate esterases. S. mutans cells in which the pgdA gene was deleted displayed a different colony texture and a slightly increased cell surface hydrophobicity, yet did not become hypersensitive to lysozyme as shown previously for S. pneumoniae. To understand this apparent lack of activity, the high resolution X-ray structure of S. mutans PgdA was determined, which showed the typical CE4 esterase fold, with metal bound in a His-His-Asp triad. Analysis of the protein surface showed that an extended groove lined with aromatic residues is orientated towards the active site residues. The protein exhibited metal dependent de-N-acetylase activity towards a hexamer of N-acetylglucosamine. No activity was observed towards shorter chitooligosaccharides or a synthetic peptidoglycan tetrasaccharide. In agreement with the lysozyme data this would suggest that S. mutans PgdA does not act on peptidoglycan but on an as yet unidentified polysaccharide within the bacterial cell surface. Strikingly, the pgdA knock-out strain showed a significant increase in aggregation/agglutination by salivary agglutinin, in agreement with this gene acting as a deacetylase of a cell surface glycan.
-
===STRUCTURE OF A STREPTOCOCCUS MUTANS CE4 ESTERASE===
+
Streptococcus mutans SMU.623c codes for a functional, metal dependent polysaccharide deacetylase that modulates interactions with salivary agglutinin.,Deng DM, Urch JE, Ten Cate JM, Rao VA, van Aalten DM, Crielaard W J Bacteriol. 2008 Oct 31. PMID:18978064<ref>PMID:18978064</ref>
-
 
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
<!--
+
</div>
-
The line below this paragraph, {{ABSTRACT_PUBMED_18978064}}, adds the Publication Abstract to the page
+
<div class="pdbe-citations 2w3z" style="background-color:#fffaf0;"></div>
-
(as it appears on PubMed at http://www.pubmed.gov), where 18978064 is the PubMed ID number.
+
== References ==
-
-->
+
<references/>
-
{{ABSTRACT_PUBMED_18978064}}
+
__TOC__
-
 
+
</StructureSection>
-
==About this Structure==
+
[[Category: Large Structures]]
-
2W3Z is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Streptococcus_mutans_ua159 Streptococcus mutans ua159]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2W3Z OCA].
+
[[Category: Streptococcus mutans UA159]]
-
 
+
[[Category: Crielaard W]]
-
==Reference==
+
[[Category: Deng DM]]
-
Streptococcus mutans SMU.623c codes for a functional, metal dependent polysaccharide deacetylase that modulates interactions with salivary agglutinin., Deng DM, Urch JE, Ten Cate JM, Rao VA, van Aalten DM, Crielaard W, J Bacteriol. 2008 Oct 31. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18978064 18978064]
+
[[Category: Rao VA]]
-
[[Category: Chitin deacetylase]]
+
[[Category: Urch JE]]
-
[[Category: Single protein]]
+
[[Category: Ten Cate JM]]
-
[[Category: Streptococcus mutans ua159]]
+
[[Category: Van Aalten DMF]]
-
[[Category: Pdbx_ordinal=, <PDBx:audit_author.]]
+
-
[[Category: Carbohydrate esterase family 4]]
+
-
[[Category: Cell surface surface deacetylase]]
+
-
[[Category: Divale metal cation dependent]]
+
-
[[Category: Glcnac de-n-acetylase]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: Pgda]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Dec 31 20:18:06 2008''
+

Current revision

Structure of a Streptococcus mutans CE4 esterase

PDB ID 2w3z

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools