This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3c1d

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:32, 21 February 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3c1d.png|left|200px]]
 
-
<!--
+
==X-ray crystal structure of RecX==
-
The line below this paragraph, containing "STRUCTURE_3c1d", creates the "Structure Box" on the page.
+
<StructureSection load='3c1d' size='340' side='right'caption='[[3c1d]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3c1d]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C1D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3C1D FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3c1d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3c1d OCA], [https://pdbe.org/3c1d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3c1d RCSB], [https://www.ebi.ac.uk/pdbsum/3c1d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3c1d ProSAT]</span></td></tr>
-
{{STRUCTURE_3c1d| PDB=3c1d | SCENE= }}
+
</table>
-
 
+
== Function ==
-
===X-ray crystal structure of RecX===
+
[https://www.uniprot.org/uniprot/RECX_ECO57 RECX_ECO57] Modulates RecA activity through direct physical interaction. Can inhibit both RecA recombinase and coprotease activities. May have a regulatory role during the SOS response. Inhibits DNA strand exchange in vitro (By similarity).
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
<!--
+
Check<jmol>
-
The line below this paragraph, {{ABSTRACT_PUBMED_18650935}}, adds the Publication Abstract to the page
+
<jmolCheckbox>
-
(as it appears on PubMed at http://www.pubmed.gov), where 18650935 is the PubMed ID number.
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/c1/3c1d_consurf.spt"</scriptWhenChecked>
-
-->
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
{{ABSTRACT_PUBMED_18650935}}
+
<text>to colour the structure by Evolutionary Conservation</text>
-
 
+
</jmolCheckbox>
-
==About this Structure==
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3c1d ConSurf].
-
3C1D is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C1D OCA].
+
<div style="clear:both"></div>
-
 
+
__TOC__
-
==Reference==
+
</StructureSection>
-
Structural basis for inhibition of homologous recombination by the RecX protein., Ragone S, Maman JD, Furnham N, Pellegrini L, EMBO J. 2008 Aug 20;27(16):2259-69. Epub 2008 Jul 24. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18650935 18650935]
+
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
-
[[Category: Furnham, N.]]
+
[[Category: Large Structures]]
-
[[Category: Maman, J D.]]
+
[[Category: Furnham N]]
-
[[Category: Pellegrini, L.]]
+
[[Category: Maman JD]]
-
[[Category: Ragone, S.]]
+
[[Category: Pellegrini L]]
-
[[Category: Cytoplasm]]
+
[[Category: Ragone S]]
-
[[Category: Dna binding protein]]
+
-
[[Category: Dna damage]]
+
-
[[Category: Dna repair]]
+
-
[[Category: Helix-turn-helix]]
+
-
[[Category: Recombination]]
+
-
[[Category: Sos response]]
+
-
[[Category: Tandem repeat]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 7 08:46:31 2009''
+

Current revision

X-ray crystal structure of RecX

PDB ID 3c1d

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3c1d"
Personal tools