We apologize for Proteopedia being slow to respond. For the past two years, a new implementation of Proteopedia has been being built. Soon, it will replace this 18-year old system. All existing content will be moved to the new system at a date that will be announced here.

3fif

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (01:48, 21 November 2024) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3fif.jpg|left|200px]]
 
-
<!--
+
==Crystal structure of the ygdR protein from E.coli. Northeast Structural Genomics target ER382A.==
-
The line below this paragraph, containing "STRUCTURE_3fif", creates the "Structure Box" on the page.
+
<StructureSection load='3fif' size='340' side='right'caption='[[3fif]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3fif]] is a 9 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] and [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FIF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3FIF FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.7&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
{{STRUCTURE_3fif| PDB=3fif | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3fif FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3fif OCA], [https://pdbe.org/3fif PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3fif RCSB], [https://www.ebi.ac.uk/pdbsum/3fif PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3fif ProSAT]</span></td></tr>
-
 
+
</table>
-
===Crystal structure of the ygdR protein from E.coli. Northeast Structural Genomics target ER382A.===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/YGDR_ECOLI YGDR_ECOLI]
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
3FIF is a 9 chains structure of sequences from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] and [http://en.wikipedia.org/wiki/Escherichia_coli_k-12 Escherichia coli k-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FIF OCA].
+
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fi/3fif_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3fif ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
-
[[Category: Escherichia coli k-12]]
+
[[Category: Escherichia coli K-12]]
-
[[Category: Acton, T B.]]
+
[[Category: Large Structures]]
-
[[Category: Baran, M.]]
+
[[Category: Acton TB]]
-
[[Category: Chen, C X.]]
+
[[Category: Baran M]]
-
[[Category: Cunningham, K.]]
+
[[Category: Chen CX]]
-
[[Category: Hunt, J F.]]
+
[[Category: Cunningham K]]
-
[[Category: Jiang, M.]]
+
[[Category: Hunt JF]]
-
[[Category: Kuzin, A P.]]
+
[[Category: Jiang M]]
-
[[Category: Liu, J C.]]
+
[[Category: Kuzin AP]]
-
[[Category: Ma, L.]]
+
[[Category: Liu JC]]
-
[[Category: Montelione, G T.]]
+
[[Category: Ma L]]
-
[[Category: NESG, Northeast Structural Genomics Consortium.]]
+
[[Category: Montelione GT]]
-
[[Category: Rossi, P.]]
+
[[Category: Rossi P]]
-
[[Category: Rost, B.]]
+
[[Category: Rost B]]
-
[[Category: Seetharaman, J.]]
+
[[Category: Seetharaman J]]
-
[[Category: Su, M.]]
+
[[Category: Su M]]
-
[[Category: Swapna, G V.T.]]
+
[[Category: Swapna GVT]]
-
[[Category: Tong, L.]]
+
[[Category: Tong L]]
-
[[Category: Xiao, R.]]
+
[[Category: Xiao R]]
-
[[Category: Cell membrane]]
+
-
[[Category: Lipoprotein]]
+
-
[[Category: Membrane]]
+
-
[[Category: Northeast structural genomics consortium]]
+
-
[[Category: Palmitate]]
+
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi-2]]
+
-
[[Category: Structural genomic]]
+
-
[[Category: Unknown function]]
+
-
[[Category: Ygdr ygdr_ecoli nesg x-ray structure]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 7 09:35:41 2009''
+

Current revision

Crystal structure of the ygdR protein from E.coli. Northeast Structural Genomics target ER382A.

PDB ID 3fif

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3fif"
Personal tools