2cy1

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:21, 25 October 2023) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2cy1.png|left|200px]]
 
-
<!--
+
==Crystal structure of APE1850==
-
The line below this paragraph, containing "STRUCTURE_2cy1", creates the "Structure Box" on the page.
+
<StructureSection load='2cy1' size='340' side='right'caption='[[2cy1]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2cy1]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Aeropyrum_pernix_K1 Aeropyrum pernix K1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CY1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2CY1 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2cy1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cy1 OCA], [https://pdbe.org/2cy1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2cy1 RCSB], [https://www.ebi.ac.uk/pdbsum/2cy1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2cy1 ProSAT], [https://www.topsan.org/Proteins/RSGI/2cy1 TOPSAN]</span></td></tr>
-
{{STRUCTURE_2cy1| PDB=2cy1 | SCENE= }}
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q9YAU4_AERPE Q9YAU4_AERPE]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cy/2cy1_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2cy1 ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
The transcription termination factor NusA from Aeropyrum pernix was crystallized using a counter-diffusion technique in both terrestrial and microgravity environments. Crystallization under microgravity conditions significantly reduced the twinning content (1.0%) compared with terrestrially grown crystals (18.3%) and improved the maximum resolution from 3.0 to 2.29 A, with similar unit-cell parameters. Based on a comparison of the crystal parameters, the effect of microgravity on protein crystallization is discussed.
-
===Crystal structure of APE1850===
+
Crystallization of the archaeal transcription termination factor NusA: a significant decrease in twinning under microgravity conditions.,Tanaka H, Umehara T, Inaka K, Takahashi S, Shibata R, Bessho Y, Sato M, Sugiyama S, Fusatomi E, Terada T, Shirouzu M, Sano S, Motohara M, Kobayashi T, Tanaka T, Tanaka A, Yokoyama S Acta Crystallogr Sect F Struct Biol Cryst Commun. 2007 Feb 1;63(Pt, 2):69-73. Epub 2007 Jan 17. PMID:17277442<ref>PMID:17277442</ref>
-
 
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
<!--
+
</div>
-
The line below this paragraph, {{ABSTRACT_PUBMED_17277442}}, adds the Publication Abstract to the page
+
<div class="pdbe-citations 2cy1" style="background-color:#fffaf0;"></div>
-
(as it appears on PubMed at http://www.pubmed.gov), where 17277442 is the PubMed ID number.
+
== References ==
-
-->
+
<references/>
-
{{ABSTRACT_PUBMED_17277442}}
+
__TOC__
-
 
+
</StructureSection>
-
==About this Structure==
+
[[Category: Aeropyrum pernix K1]]
-
2CY1 is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Aeropyrum_pernix_k1 Aeropyrum pernix k1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CY1 OCA].
+
[[Category: Large Structures]]
-
 
+
[[Category: Bessho Y]]
-
==Reference==
+
[[Category: Shibata R]]
-
<ref group="xtra">PMID:17277442</ref><references group="xtra"/>
+
[[Category: Shirouzu M]]
-
[[Category: Aeropyrum pernix k1]]
+
[[Category: Umehara T]]
-
[[Category: Bessho, Y.]]
+
[[Category: Yokoyama S]]
-
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+
-
[[Category: Shibata, R.]]
+
-
[[Category: Shirouzu, M.]]
+
-
[[Category: Umehara, T.]]
+
-
[[Category: Yokoyama, S.]]
+
-
[[Category: Archaeal nusa]]
+
-
[[Category: Kh domain]]
+
-
[[Category: Microgravity]]
+
-
[[Category: National project on protein structural and functional analyse]]
+
-
[[Category: Nppsfa]]
+
-
[[Category: Riken structural genomics/proteomics initiative]]
+
-
[[Category: Rna binding protein]]
+
-
[[Category: Rsgi]]
+
-
[[Category: Structural genomic]]
+
-
[[Category: Transcription termination]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 21 09:28:18 2009''
+

Current revision

Crystal structure of APE1850

PDB ID 2cy1

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2cy1"
Personal tools