2jkd

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{{Seed}}
 
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[[Image:2jkd.png|left|200px]]
 
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==Structure of the yeast Pml1 splicing factor and its integration into the RES complex==
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The line below this paragraph, containing "STRUCTURE_2jkd", creates the "Structure Box" on the page.
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<StructureSection load='2jkd' size='340' side='right'caption='[[2jkd]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2jkd]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JKD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2JKD FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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{{STRUCTURE_2jkd| PDB=2jkd | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2jkd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jkd OCA], [https://pdbe.org/2jkd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2jkd RCSB], [https://www.ebi.ac.uk/pdbsum/2jkd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2jkd ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/PML1_YEAST PML1_YEAST] Required for efficient splicing and pre-mRNA nuclear retention.<ref>PMID:15565172</ref>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jk/2jkd_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2jkd ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The RES complex was previously identified in yeast as a splicing factor affecting nuclear pre-mRNA retention. This complex was shown to contain three subunits, namely Snu17, Bud13 and Pml1, but its mode of action remains ill-defined. To obtain insights into its function, we have performed a structural investigation of this factor. Production of a short N-terminal truncation of residues that are apparently disordered allowed us to determine the X-ray crystallographic structure of Pml1. This demonstrated that it consists mainly of a FHA domain, a fold which has been shown to mediate interactions with phosphothreonine-containing peptides. Using a new sensitive assay based on alternative splice-site choice, we show, however, that mutation of the putative phosphothreonine-binding pocket of Pml1 does not affect pre-mRNA splicing. We have also investigated how Pml1 integrates into the RES complex. Production of recombinant complexes, combined with serial truncation and mutagenesis of their subunits, indicated that Pml1 binds to Snu17, which itself contacts Bud13. This analysis allowed us to demarcate the binding sites involved in the formation of this assembly. We propose a model of the organization of the RES complex based on these results, and discuss the functional consequences of this architecture.
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===STRUCTURE OF THE YEAST PML1 SPLICING FACTOR AND ITS INTEGRATION INTO THE RES COMPLEX===
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Structure of the yeast Pml1 splicing factor and its integration into the RES complex.,Brooks MA, Dziembowski A, Quevillon-Cheruel S, Henriot V, Faux C, van Tilbeurgh H, Seraphin B Nucleic Acids Res. 2009 Jan;37(1):129-43. Epub 2008 Nov 25. PMID:19033360<ref>PMID:19033360</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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The line below this paragraph, {{ABSTRACT_PUBMED_19033360}}, adds the Publication Abstract to the page
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<div class="pdbe-citations 2jkd" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 19033360 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_19033360}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Large Structures]]
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2JKD is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JKD OCA].
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==Reference==
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Structure of the yeast Pml1 splicing factor and its integration into the RES complex., Brooks MA, Dziembowski A, Quevillon-Cheruel S, Henriot V, Faux C, van Tilbeurgh H, Seraphin B, Nucleic Acids Res. 2008 Nov 25. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/19033360 19033360]
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[[Category: Saccharomyces cerevisiae]]
[[Category: Saccharomyces cerevisiae]]
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[[Category: Single protein]]
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[[Category: Brooks MA]]
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[[Category: Pdbx_ordinal=, <PDBx:audit_author.]]
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[[Category: Dziembowski A]]
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[[Category: Cytoplasm]]
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[[Category: Faux C]]
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[[Category: Gene regulation]]
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[[Category: Henriot V]]
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[[Category: Mrna processing]]
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[[Category: Quevillon-Cheruel S]]
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[[Category: Mrna splicing]]
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[[Category: Seraphin B]]
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[[Category: Nucleus]]
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[[Category: Van Tilbeurgh H]]
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[[Category: Phospho-peptide recognition]]
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[[Category: Pml1/snu17/bud13]]
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[[Category: Pre-mrna splicing]]
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[[Category: Re]]
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[[Category: Saccharomyces cerevisiae]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 21 20:50:13 2009''
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Current revision

Structure of the yeast Pml1 splicing factor and its integration into the RES complex

PDB ID 2jkd

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