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1wkv

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(New page: 200px<br /><applet load="1wkv" size="450" color="white" frame="true" align="right" spinBox="true" caption="1wkv, resolution 2.0&Aring;" /> '''Crystal structure of ...)
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[[Image:1wkv.gif|left|200px]]<br /><applet load="1wkv" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1wkv, resolution 2.0&Aring;" />
 
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'''Crystal structure of O-phosphoserine sulfhydrylase'''<br />
 
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==Overview==
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==Crystal structure of O-phosphoserine sulfhydrylase==
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O-Phosphoserine sulfhydrylase is a new enzyme found in a hyperthermophilic, archaeon, Aeropyrum pernix K1. This enzyme catalyzes a novel cysteine, synthetic reaction from O-phospho-l-serine and sulfide. The crystal, structure of the enzyme was determined at 2.0A resolution using the method, of multi-wavelength anomalous dispersion. A monomer consists of three, domains, including an N-terminal domain with a new alpha/beta fold. The, topology folds of the middle and C-terminal domains were similar to those, of the O-acetylserine sulfhydrylase-A from Salmonella typhimurium and the, cystathionine beta-synthase from human. The cofactor, pyridoxal, 5'-phosphate, is bound in a cleft between the middle and C-terminal, domains through a covalent linkage to Lys127. Based on the structure, determined, O-phospho-l-serine could be rationally modeled into the active, site of the enzyme. An enzyme-substrate complex model and a mutation, experiment revealed that Arg297, unique to hyperthermophilic archaea, is, one of the most crucial residues for O-phosphoserine sulfhydrylation, activity. There are more hydrophobic areas and less electric charges at, the dimer interface, compared to the S.typhimurium O-acetylserine, sulfhydrylase.
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<StructureSection load='1wkv' size='340' side='right'caption='[[1wkv]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1wkv]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Aeropyrum_pernix_K1 Aeropyrum pernix K1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WKV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1WKV FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1wkv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wkv OCA], [https://pdbe.org/1wkv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1wkv RCSB], [https://www.ebi.ac.uk/pdbsum/1wkv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1wkv ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/CYSO_AERPE CYSO_AERPE] Cysteine synthase that can also catalyze the synthesis of S-sulfo-L-cysteine from thiosulfate and O(3)-acetyl-L-serine, as well as the sulfhydrylation of L-serine by sulfide.<ref>PMID:12644499</ref>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/wk/1wkv_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1wkv ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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O-Phosphoserine sulfhydrylase is a new enzyme found in a hyperthermophilic archaeon, Aeropyrum pernix K1. This enzyme catalyzes a novel cysteine synthetic reaction from O-phospho-l-serine and sulfide. The crystal structure of the enzyme was determined at 2.0A resolution using the method of multi-wavelength anomalous dispersion. A monomer consists of three domains, including an N-terminal domain with a new alpha/beta fold. The topology folds of the middle and C-terminal domains were similar to those of the O-acetylserine sulfhydrylase-A from Salmonella typhimurium and the cystathionine beta-synthase from human. The cofactor, pyridoxal 5'-phosphate, is bound in a cleft between the middle and C-terminal domains through a covalent linkage to Lys127. Based on the structure determined, O-phospho-l-serine could be rationally modeled into the active site of the enzyme. An enzyme-substrate complex model and a mutation experiment revealed that Arg297, unique to hyperthermophilic archaea, is one of the most crucial residues for O-phosphoserine sulfhydrylation activity. There are more hydrophobic areas and less electric charges at the dimer interface, compared to the S.typhimurium O-acetylserine sulfhydrylase.
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==About this Structure==
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Three-dimensional structure of a new enzyme, O-phosphoserine sulfhydrylase, involved in l-cysteine biosynthesis by a hyperthermophilic archaeon, Aeropyrum pernix K1, at 2.0A resolution.,Oda Y, Mino K, Ishikawa K, Ataka M J Mol Biol. 2005 Aug 12;351(2):334-44. PMID:16005886<ref>PMID:16005886</ref>
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1WKV is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Aeropyrum_pernix Aeropyrum pernix] with ACT and PLP as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1WKV OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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Three-dimensional structure of a new enzyme, O-phosphoserine sulfhydrylase, involved in l-cysteine biosynthesis by a hyperthermophilic archaeon, Aeropyrum pernix K1, at 2.0A resolution., Oda Y, Mino K, Ishikawa K, Ataka M, J Mol Biol. 2005 Aug 12;351(2):334-44. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=16005886 16005886]
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</div>
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[[Category: Aeropyrum pernix]]
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<div class="pdbe-citations 1wkv" style="background-color:#fffaf0;"></div>
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[[Category: Single protein]]
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== References ==
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[[Category: Ataka, M.]]
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<references/>
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[[Category: Ishikawa, K.]]
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__TOC__
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[[Category: Mino, K.]]
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</StructureSection>
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[[Category: Oda, Y.]]
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[[Category: Aeropyrum pernix K1]]
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[[Category: ACT]]
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[[Category: Large Structures]]
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[[Category: PLP]]
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[[Category: Ataka M]]
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[[Category: homodimer]]
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[[Category: Ishikawa K]]
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[[Category: open alpha/beta folding]]
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[[Category: Mino K]]
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[[Category: Oda Y]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Wed Nov 21 05:30:01 2007''
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Current revision

Crystal structure of O-phosphoserine sulfhydrylase

PDB ID 1wkv

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