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Template:StructureTest

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Current revision (14:39, 23 August 2009) (edit) (undo)
 
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{|
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{| border='0' cellspacing='0' class='infoblock' width='{{{SIZE|350}}}'
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|{{Structure
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|PDB= {{{PDB}}}|SCENE={{{SCENE|}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|[[2chp]], resolution 2.00&Aring; (<scene name='initialview01'>default scene</scene>)}}}
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|-
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|SITE= <scene name='pdbsite=AC1:Po4+Binding+Site+For+Chain+B'>AC1</scene>
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|LIGAND= <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>
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|colspan='2' | {{#tag:applet|load='{{{PDB|1stp}}}' size='{{{SIZE|350}}}' frame='{{{FRAME|false}}}' scene='{{{SCENE|}}}' | "_"}}
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|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01043 DPS]</span>
+
|-
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2chp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2chp OCA], [http://www.ebi.ac.uk/pdbsum/2chp PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2chp RCSB]</span>
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{{#if:{{{CAPTION}}} | ! align="center" colspan="2" {{!}} {{{CAPTION}}} }}
-
|FUNCTION={{GO|id=GO:0046914 | text = transition metal ion binding}}{{GO|id=GO:0016491 | text = oxidoreductase activity}}{{GO|id=GO:0003677 | text = DNA binding}}{{GO|id=GO:0008199 | text = ferric iron binding}}
+
 
-
|PROCESS={{GO|id=GO:0006879 | text = cellular iron ion homeostasis}}{{GO|id=GO:0006950 | text = response to stress}}
+
|-
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|SARESOURCES=<span class='plainlinks'>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR009078 Ipr009078], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR012347 Ipr012347], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR002177 Ipr002177], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR008331 Ipr008331]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF00210 PF00210]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?P37960 P37960]</span>
+
 
-
|CONSURF={{!}}-
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{{#if: {{{SITE|}}} |
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{{!}} colspan="2" style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" {{!}} [[Image:Consurf_key_small.gif|center]]
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{{!}} style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;border-top:2px solid #dddddd;" {{!}} '''[[Site]]s:'''
-
{{!}}-{{!}} style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;"
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{{!}} align="left" style="background-color:#acfaac;border-top:2px solid #dddddd;" {{!}}{{{SITE}}}
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{{!}} '''Toggle Conservation Colors:'''
+
-
{{!}} align="left" style="background-color:#acfaac;border-top:2px solid #dddddd; border-right:2px solid #dddddd" {{!}}
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-
Rows = identical sequences:
+
-
<jmol>
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-
<jmolButton>
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-
<script>if (consurf_A!=1); select:A; spacefill off;color translucent -1; consurf_A = 1; javascript "document.getElementById('jmb_A').value='A [ ]'"; else; select:A; spacefill on; color opaque;consurf_A = 0;javascript "document.getElementById('jmb_A').value='A [x]';"; endif;</script>
+
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<text>A [x]</text>
+
-
<name>jmb_A</name>
+
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</jmolButton>
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-
</jmol>
+
-
<jmol>
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<jmolButton>
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<script>if (consurf_B!=1); select:B; spacefill off;color translucent -1; consurf_B = 1;javascript "document.getElementById('jmb_B').value='B [ ]'"; else; select:B; spacefill on; color opaque;consurf_B = 0;javascript "document.getElementById('jmb_B').value='B [x]';"; endif;</script>
+
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<text>B [x]</text>
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<name>jmb_B</name>
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</jmolButton>
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-
</jmol>
+
-
<jmol>
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<jmolButton>
+
-
<script>if (consurf_C!=1); select:C; spacefill off;color translucent -1; consurf_C = 1;javascript "document.getElementById('jmb_C').value='C [ ]'"; else; select:C; spacefill on; color opaque;consurf_C = 0;javascript "document.getElementById('jmb_C').value='C [ ]';"; endif;</script>
+
-
<text>C [x]</text>
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<name>jmb_C</name>
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</jmolButton>
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-
</jmol>
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<jmol>
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<jmolButton>
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-
<script>if (consurf_D!=1); select:D; spacefill off;color translucent -1; consurf_D = 1;javascript "document.getElementById('jmb_D').value='D [ ]'"; else; select:D; spacefill on; color opaque;consurf_D = 0;javascript "document.getElementById('jmb_D').value='D [x]';"; endif;</script>
+
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<text>D [x]</text>
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-
<name>jmb_D</name>
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</jmolButton>
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</jmol>
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}}
}}
-
|
+
 
-
{{Structure
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|-
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|PDB= {{{PDB}}}|SCENE={{{SCENE|}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|[[2chp]], resolution 2.00&Aring; (<scene name='initialview01'>default scene</scene>)}}}
+
 
-
|SITE= <scene name='pdbsite=AC1:Po4+Binding+Site+For+Chain+B'>AC1</scene>
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{{#if: {{{LIGAND|}}} |
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|LIGAND= <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>
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{{!}} style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;border-top:2px solid #dddddd;" {{!}} '''[[Ligand]]s:'''
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|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01043 DPS]</span>
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{{!}} align="left" style="background-color:#acfaac;border-top:2px solid #dddddd;" {{!}}{{{LIGAND}}}
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2chp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2chp OCA], [http://www.ebi.ac.uk/pdbsum/2chp PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2chp RCSB]</span>
+
-
|FUNCTION={{GO|id=GO:0046914 | text = transition metal ion binding}}{{GO|id=GO:0016491 | text = oxidoreductase activity}}{{GO|id=GO:0003677 | text = DNA binding}}{{GO|id=GO:0008199 | text = ferric iron binding}}
+
-
|PROCESS={{GO|id=GO:0006879 | text = cellular iron ion homeostasis}}{{GO|id=GO:0006950 | text = response to stress}}
+
-
|SARESOURCES=<span class='plainlinks'>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR009078 Ipr009078], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR012347 Ipr012347], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR002177 Ipr002177], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR008331 Ipr008331]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF00210 PF00210]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?P37960 P37960]</span>
+
}}
}}
 +
|-
|-
-
|
+
 
-
{{Structure
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{{#if: {{{NONSTDRES|}}} |
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|PDB= {{{PDB}}}|SCENE={{{SCENE|}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|[[2chp]], resolution 2.00&Aring; (<scene name='initialview01'>default scene</scene>)}}}
+
{{!}} style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;border-top:2px solid #dddddd;" {{!}} '''[[Non-Standard Residue]]s:'''
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|SITE= <scene name='pdbsite=AC1:Po4+Binding+Site+For+Chain+B'>AC1</scene>
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{{!}} align="left" style="background-color:#acfaac;border-top:2px solid #dddddd;" {{!}}{{{NONSTDRES}}}
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|LIGAND= <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>
+
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01043 DPS]</span>
+
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2chp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2chp OCA], [http://www.ebi.ac.uk/pdbsum/2chp PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2chp RCSB]</span>
+
-
|SARESOURCES=<span class='plainlinks'>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR009078 Ipr009078], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR012347 Ipr012347], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR002177 Ipr002177], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR008331 Ipr008331]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF00210 PF00210]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?P37960 P37960]</span>
+
}}
}}
-
|
+
 
-
{{Structure
+
|-
-
|PDB= {{{PDB}}}|SCENE={{{SCENE|}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|[[2chp]], resolution 2.00&Aring; (<scene name='initialview01'>default scene</scene>)}}}
+
 
-
|SITE= <scene name='pdbsite=AC1:Po4+Binding+Site+For+Chain+B'>AC1</scene>
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{{#if: {{{GENE|}}} |
-
|LIGAND= <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>
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{{!}} style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;border-top:2px solid #dddddd;" {{!}} '''[[Gene]]:'''
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|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01043 DPS]</span>
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{{!}} align="left" style="background-color:#acfaac;border-top:2px solid #dddddd;" {{!}}{{{GENE}}}
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2chp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2chp OCA], [http://www.ebi.ac.uk/pdbsum/2chp PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2chp RCSB]</span>
+
-
|FUNCTION={{GO|id=GO:0046914 | text = transition metal ion binding}}{{GO|id=GO:0016491 | text = oxidoreductase activity}}{{GO|id=GO:0003677 | text = DNA binding}}{{GO|id=GO:0008199 | text = ferric iron binding}}
+
-
|PROCESS={{GO|id=GO:0006879 | text = cellular iron ion homeostasis}}{{GO|id=GO:0006950 | text = response to stress}}
+
}}
}}
 +
 +
|-
 +
 +
{{#if: {{{ACTIVITY|}}} |
 +
{{!}} style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;border-top:2px solid #dddddd;" {{!}} '''[[Activity]]:'''
 +
{{!}} align="left" style="background-color:#acfaac;border-top:2px solid #dddddd;" {{!}}{{{ACTIVITY}}}
 +
}}
 +
 +
|-
 +
 +
{{#if: {{{ECnumber|}}} |
 +
{{!}} style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" {{!}} '''EC number:'''
 +
{{!}} align="left" style="background-color:#acfaac;border-top:2px solid #dddddd; border-right:2px solid #dddddd"{{!}} <span class=plainlinks>[http://www.genome.jp/dbget-bin/www_bget?enzyme+{{{ECnumber}}} {{{ECnumber}}}]</span> }}
 +
 +
|-
 +
 +
{{#if: {{{DOMAIN|}}} |
 +
{{!}} style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" {{!}} '''[[Domain]]s:'''
 +
{{!}} align="left" style="background-color:#acfaac;border-top:2px solid #dddddd; border-right:2px solid #dddddd" {{!}} {{{DOMAIN}}} }}
 +
 +
|-
 +
 +
{{#if: {{{RELATEDENTRY|}}} |
 +
{{!}} style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" {{!}} '''[[Related_structure|Related]]:'''
 +
{{!}} align="left" style="background-color:#acfaac;border-top:2px solid #dddddd; border-right:2px solid #dddddd" {{!}} {{{RELATEDENTRY}}}|}}
 +
{{#if: {{{xPROCESS|}}}{{{xFUNCTION|}}}{{{SARESOURCES|}}} | {{StructureSA|xPROCESS={{{xPROCESS|}}}|xFUNCTION={{{xFUNCTION|}}}|SARESOURCES={{{SARESOURCES|}}}}}|}}
 +
{{#if: {{{PROCESS|}}}{{{FUNCTION|}}}{{{FARESOURCES|}}}{{{COMPONENT|}}} | {{StructureFATest|PROCESS={{{PROCESS|}}}|FUNCTION={{{FUNCTION|}}}|FARESOURCES={{{FARESOURCES|}}}|COMPONENT={{{COMPONENT|}}}}}|}}
 +
{{#if: {{{CONSURF|}}} | {{StructureCS|CONSURF={{{CONSURF|}}}}}|}}
 +
|-
 +
 +
{{#if: {{{RESOURCES|}}} |
 +
{{!}} style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" {{!}} '''Resources:'''
 +
{{!}} align="left" style="background-color:#acfaac;border-top:2px solid #dddddd; border-right:2px solid #dddddd" {{!}} {{{RESOURCES}}} }}
 +
|-
|-
-
|
+
{{#if: {{{PDB|}}} |
-
{{Structure
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{{!}} style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;border-top:2px solid #dddddd;" {{!}} '''[[Coordinate]]s:'''
-
|PDB= {{{PDB}}}|SCENE={{{SCENE|}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|[[2chp]], resolution 2.00&Aring; (<scene name='initialview01'>default scene</scene>)}}}
+
{{!}} align="left" style="background-color:#acfaac;border-top:2px solid #dddddd;" {{!}} save as <span class=plainlinks>[http://proteopedia.org/wiki/coord.php?{{{PDB}}}:pdb pdb], [http://proteopedia.org/wiki/coord.php?{{{PDB}}}:cif mmCIF], [http://proteopedia.org/wiki/coord.php?{{{PDB}}}:xml xml]</span>
-
|SITE= <scene name='pdbsite=AC1:Po4+Binding+Site+For+Chain+B'>AC1</scene>
+
-
|LIGAND= <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>
+
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01043 DPS]</span>
+
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2chp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2chp OCA], [http://www.ebi.ac.uk/pdbsum/2chp PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2chp RCSB]</span>
+
-
|CONSURF={{!}}-
+
-
{{!}} colspan="2" style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" {{!}} [[Image:Consurf_key_small.gif|center]]
+
-
{{!}}-{{!}} style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;"
+
-
{{!}} '''Toggle Conservation Colors:'''
+
-
{{!}} align="left" style="background-color:#acfaac;border-top:2px solid #dddddd; border-right:2px solid #dddddd" {{!}}
+
-
Rows = identical sequences:
+
-
<jmol>
+
-
<jmolButton>
+
-
<script>if (consurf_A!=1); select:A; spacefill off;color translucent -1; consurf_A = 1; javascript "document.getElementById('jmb_A').value='A [ ]'"; else; select:A; spacefill on; color opaque;consurf_A = 0;javascript "document.getElementById('jmb_A').value='A [x]';"; endif;</script>
+
-
<text>A [x]</text>
+
-
<name>jmb_A</name>
+
-
</jmolButton>
+
-
</jmol>
+
-
<jmol>
+
-
<jmolButton>
+
-
<script>if (consurf_B!=1); select:B; spacefill off;color translucent -1; consurf_B = 1;javascript "document.getElementById('jmb_B').value='B [ ]'"; else; select:B; spacefill on; color opaque;consurf_B = 0;javascript "document.getElementById('jmb_B').value='B [x]';"; endif;</script>
+
-
<text>B [x]</text>
+
-
<name>jmb_B</name>
+
-
</jmolButton>
+
-
</jmol>
+
-
<jmol>
+
-
<jmolButton>
+
-
<script>if (consurf_C!=1); select:C; spacefill off;color translucent -1; consurf_C = 1;javascript "document.getElementById('jmb_C').value='C [ ]'"; else; select:C; spacefill on; color opaque;consurf_C = 0;javascript "document.getElementById('jmb_C').value='C [ ]';"; endif;</script>
+
-
<text>C [x]</text>
+
-
<name>jmb_C</name>
+
-
</jmolButton>
+
-
</jmol>
+
-
<jmol>
+
-
<jmolButton>
+
-
<script>if (consurf_D!=1); select:D; spacefill off;color translucent -1; consurf_D = 1;javascript "document.getElementById('jmb_D').value='D [ ]'"; else; select:D; spacefill on; color opaque;consurf_D = 0;javascript "document.getElementById('jmb_D').value='D [x]';"; endif;</script>
+
-
<text>D [x]</text>
+
-
<name>jmb_D</name>
+
-
</jmolButton>
+
-
</jmol>
+
}}
}}
 +
|}
|}
 +
 +
 +
<!--
 +
{{ #if: <condition string> | <code if true> }}
 +
{{ #if: <condition string> | <code if true> | <code if false> }}
 +
-->

Current revision

PDB ID 1stp

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Proteopedia Page Contributors and Editors (what is this?)

Eran Hodis

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