1ws1
From Proteopedia
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(New page: 200px<br /><applet load="1ws1" size="450" color="white" frame="true" align="right" spinBox="true" caption="1ws1, resolution 2.00Å" /> '''Structure analysis o...) |
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| - | [[Image:1ws1.gif|left|200px]]<br /><applet load="1ws1" size="450" color="white" frame="true" align="right" spinBox="true" | ||
| - | caption="1ws1, resolution 2.00Å" /> | ||
| - | '''Structure analysis of peptide deformylase from Bacillus cereus'''<br /> | ||
| - | == | + | ==Structure analysis of peptide deformylase from Bacillus cereus== |
| - | + | <StructureSection load='1ws1' size='340' side='right'caption='[[1ws1]], [[Resolution|resolution]] 2.00Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | == | + | <table><tr><td colspan='2'>[[1ws1]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_cereus Bacillus cereus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WS1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1WS1 FirstGlance]. <br> |
| - | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2Å</td></tr> | |
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BB2:ACTINONIN'>BB2</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ws1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ws1 OCA], [https://pdbe.org/1ws1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ws1 RCSB], [https://www.ebi.ac.uk/pdbsum/1ws1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ws1 ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/DEF1_BACCR DEF1_BACCR] Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions (By similarity). | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ws/1ws1_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ws1 ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
[[Category: Bacillus cereus]] | [[Category: Bacillus cereus]] | ||
| - | [[Category: | + | [[Category: Large Structures]] |
| - | + | [[Category: Kim EE]] | |
| - | [[Category: Kim | + | [[Category: Moon JH]] |
| - | [[Category: Moon | + | [[Category: Park JK]] |
| - | [[Category: Park | + | |
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Current revision
Structure analysis of peptide deformylase from Bacillus cereus
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