3fd8

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (01:48, 21 November 2024) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3fd8.jpg|left|200px]]
 
-
<!--
+
==Crystal Structure of an oxidoreductase from Enterococcus faecalis==
-
The line below this paragraph, containing "STRUCTURE_3fd8", creates the "Structure Box" on the page.
+
<StructureSection load='3fd8' size='340' side='right'caption='[[3fd8]], [[Resolution|resolution]] 2.45&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FD8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3FD8 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.45&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene></td></tr>
-
{{STRUCTURE_3fd8| PDB=3fd8 | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3fd8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3fd8 OCA], [https://pdbe.org/3fd8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3fd8 RCSB], [https://www.ebi.ac.uk/pdbsum/3fd8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3fd8 ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3fd8 TOPSAN]</span></td></tr>
-
 
+
</table>
-
===Crystal Structure of an oxidoreductase from Enterococcus faecalis===
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
==About this Structure==
+
<jmolCheckbox>
-
3FD8 is a 6 chains structure of sequences from [http://en.wikipedia.org/wiki/Enterococcus_faecalis Enterococcus faecalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FD8 OCA].
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fd/3fd8_consurf.spt"</scriptWhenChecked>
-
[[Category: Enterococcus faecalis]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-
[[Category: Burley, S K.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Damodharan, L.]]
+
</jmolCheckbox>
-
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3fd8 ConSurf].
-
[[Category: Swaminathan, S.]]
+
<div style="clear:both"></div>
-
[[Category: 11133d1]]
+
__TOC__
-
[[Category: Gfo/ldh/moca]]
+
</StructureSection>
-
[[Category: New york sgx research center for structural genomic]]
+
[[Category: Large Structures]]
-
[[Category: Nysgxrc]]
+
[[Category: Burley SK]]
-
[[Category: Oxidoreductase]]
+
[[Category: Damodharan L]]
-
[[Category: Protein structure initiative]]
+
[[Category: Swaminathan S]]
-
[[Category: Psi-ii]]
+
-
[[Category: Structural genomic]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 4 11:39:12 2009''
+

Current revision

Crystal Structure of an oxidoreductase from Enterococcus faecalis

PDB ID 3fd8

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools