2i75

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:07, 30 August 2023) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2i75.png|left|200px]]
 
-
<!--
+
==Crystal Structure of Human Protein Tyrosine Phosphatase N4 (PTPN4)==
-
The line below this paragraph, containing "STRUCTURE_2i75", creates the "Structure Box" on the page.
+
<StructureSection load='2i75' size='340' side='right'caption='[[2i75]], [[Resolution|resolution]] 2.45&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2i75]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2I75 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2I75 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.45&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
{{STRUCTURE_2i75| PDB=2i75 | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2i75 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2i75 OCA], [https://pdbe.org/2i75 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2i75 RCSB], [https://www.ebi.ac.uk/pdbsum/2i75 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2i75 ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/PTN4_HUMAN PTN4_HUMAN] May act at junctions between the membrane and the cytoskeleton.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/i7/2i75_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2i75 ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Protein tyrosine phosphatases (PTPs) play a critical role in regulating cellular functions by selectively dephosphorylating their substrates. Here we present 22 human PTP crystal structures that, together with prior structural knowledge, enable a comprehensive analysis of the classical PTP family. Despite their largely conserved fold, surface properties of PTPs are strikingly diverse. A potential secondary substrate-binding pocket is frequently found in phosphatases, and this has implications for both substrate recognition and development of selective inhibitors. Structural comparison identified four diverse catalytic loop (WPD) conformations and suggested a mechanism for loop closure. Enzymatic assays revealed vast differences in PTP catalytic activity and identified PTPD1, PTPD2, and HDPTP as catalytically inert protein phosphatases. We propose a "head-to-toe" dimerization model for RPTPgamma/zeta that is distinct from the "inhibitory wedge" model and that provides a molecular basis for inhibitory regulation. This phosphatome resource gives an expanded insight into intrafamily PTP diversity, catalytic activity, substrate recognition, and autoregulatory self-association.
-
===Crystal Structure of Human Protein Tyrosine Phosphatase N4 (PTPN4)===
+
Large-scale structural analysis of the classical human protein tyrosine phosphatome.,Barr AJ, Ugochukwu E, Lee WH, King ON, Filippakopoulos P, Alfano I, Savitsky P, Burgess-Brown NA, Muller S, Knapp S Cell. 2009 Jan 23;136(2):352-63. PMID:19167335<ref>PMID:19167335</ref>
 +
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 2i75" style="background-color:#fffaf0;"></div>
-
<!--
+
==See Also==
-
The line below this paragraph, {{ABSTRACT_PUBMED_19167335}}, adds the Publication Abstract to the page
+
*[[Tyrosine phosphatase 3D structures|Tyrosine phosphatase 3D structures]]
-
(as it appears on PubMed at http://www.pubmed.gov), where 19167335 is the PubMed ID number.
+
== References ==
-
-->
+
<references/>
-
{{ABSTRACT_PUBMED_19167335}}
+
__TOC__
-
 
+
</StructureSection>
-
==About this Structure==
+
-
2I75 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2I75 OCA].
+
-
 
+
-
==Reference==
+
-
Large-scale structural analysis of the classical human protein tyrosine phosphatome., Barr AJ, Ugochukwu E, Lee WH, King ON, Filippakopoulos P, Alfano I, Savitsky P, Burgess-Brown NA, Muller S, Knapp S, Cell. 2009 Jan 23;136(2):352-63. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/19167335 19167335]
+
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
-
[[Category: Protein-tyrosine-phosphatase]]
+
[[Category: Large Structures]]
-
[[Category: Single protein]]
+
[[Category: Arrowsmith C]]
-
[[Category: Pdbx_ordinal=, <PDBx:audit_author.]]
+
[[Category: Barr A]]
-
[[Category: Hydrolase]]
+
[[Category: Burgess N]]
-
[[Category: Meg-1]]
+
[[Category: Das S]]
-
[[Category: Ptp]]
+
[[Category: Edwards A]]
-
[[Category: Ptpn4]]
+
[[Category: Knapp S]]
-
[[Category: Sgc]]
+
[[Category: Savitsky P]]
-
[[Category: Structural genomic]]
+
[[Category: Sundstrom M]]
-
[[Category: Structural genomics consortium]]
+
[[Category: Turnbull A]]
-
[[Category: Tyrosine phosphatase]]
+
[[Category: Ugochukwu E]]
-
 
+
[[Category: Weigelt J]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 4 20:04:46 2009''
+
[[Category: Von Delft F]]

Current revision

Crystal Structure of Human Protein Tyrosine Phosphatase N4 (PTPN4)

PDB ID 2i75

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools