This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3fyf

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:51, 21 February 2024) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3fyf.jpg|left|200px]]
 
-
<!--
+
==Crystal structure of uncharacterized protein bvu_3222 from bacteroides vulgatus==
-
The line below this paragraph, containing "STRUCTURE_3fyf", creates the "Structure Box" on the page.
+
<StructureSection load='3fyf' size='340' side='right'caption='[[3fyf]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3fyf]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Phocaeicola_vulgatus_ATCC_8482 Phocaeicola vulgatus ATCC 8482]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FYF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3FYF FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3fyf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3fyf OCA], [https://pdbe.org/3fyf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3fyf RCSB], [https://www.ebi.ac.uk/pdbsum/3fyf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3fyf ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3fyf TOPSAN]</span></td></tr>
-
{{STRUCTURE_3fyf| PDB=3fyf | SCENE= }}
+
</table>
-
 
+
== Function ==
-
===Crystal structure of uncharacterized protein bvu_3222 from bacteroides vulgatus===
+
[https://www.uniprot.org/uniprot/A6L587_PHOV8 A6L587_PHOV8]
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
==About this Structure==
+
Check<jmol>
-
3FYF is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Bacteroides_vulgatus Bacteroides vulgatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FYF OCA].
+
<jmolCheckbox>
-
[[Category: Bacteroides vulgatus]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fy/3fyf_consurf.spt"</scriptWhenChecked>
-
[[Category: Almo, S C.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Bonnano, J B.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Burley, S K.]]
+
</jmolCheckbox>
-
[[Category: Chang, S.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3fyf ConSurf].
-
[[Category: Groshong, C.]]
+
<div style="clear:both"></div>
-
[[Category: Koss, J.]]
+
__TOC__
-
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
+
</StructureSection>
-
[[Category: Ozyurt, S.]]
+
[[Category: Large Structures]]
-
[[Category: Patskovsky, Y.]]
+
[[Category: Phocaeicola vulgatus ATCC 8482]]
-
[[Category: Rutter, M.]]
+
[[Category: Almo SC]]
-
[[Category: Sauder, J M.]]
+
[[Category: Bonanno JB]]
-
[[Category: New york sgx research center for structural genomic]]
+
[[Category: Burley SK]]
-
[[Category: New york structural genomix research consortium nysgxrc]]
+
[[Category: Chang S]]
-
[[Category: Periplasmic]]
+
[[Category: Groshong C]]
-
[[Category: Protein structure initiative]]
+
[[Category: Koss J]]
-
[[Category: Psi-2]]
+
[[Category: Ozyurt S]]
-
[[Category: Structural genomic]]
+
[[Category: Patskovsky Y]]
-
[[Category: Unknown function]]
+
[[Category: Rutter M]]
-
 
+
[[Category: Sauder JM]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 11 12:44:51 2009''
+

Current revision

Crystal structure of uncharacterized protein bvu_3222 from bacteroides vulgatus

PDB ID 3fyf

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools