3bly

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{{Seed}}
 
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[[Image:3bly.png|left|200px]]
 
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==Pyranose 2-oxidase from Trametes multicolor, E542K/L537W==
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The line below this paragraph, containing "STRUCTURE_3bly", creates the "Structure Box" on the page.
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<StructureSection load='3bly' size='340' side='right'caption='[[3bly]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3bly]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Coriolus_zonatus Coriolus zonatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BLY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BLY FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene></td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1tt0|1tt0]], [[2igo|2igo]], [[2igk|2igk]], [[2igm|2igm]], [[2ign|2ign]], [[3bg6|3bg6]], [[3bg7|3bg7]]</div></td></tr>
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{{STRUCTURE_3bly| PDB=3bly | SCENE= }}
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">p2o ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=230624 Coriolus zonatus])</td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Pyranose_oxidase Pyranose oxidase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.3.10 1.1.3.10] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bly FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bly OCA], [https://pdbe.org/3bly PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bly RCSB], [https://www.ebi.ac.uk/pdbsum/3bly PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bly ProSAT]</span></td></tr>
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</table>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bl/3bly_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3bly ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The fungal homotetrameric flavoprotein pyranose 2-oxidase (P2Ox; EC 1.1.3.10) catalyses the oxidation of various sugars at position C2, while, concomitantly, electrons are transferred to oxygen as well as to alternative electron acceptors (e.g. oxidized ferrocenes). These properties make P2Ox an interesting enzyme for various biotechnological applications. Random mutagenesis has previously been used to identify variant E542K, which shows increased thermostability. In the present study, we selected position Leu537 for saturation mutagenesis, and identified variants L537G and L537W, which are characterized by a higher stability and improved catalytic properties. We report detailed studies on both thermodynamic and kinetic stability, as well as the kinetic properties of the mutational variants E542K, E542R, L537G and L537W, and the respective double mutants (L537G/E542K, L537G/E542R, L537W/E542K and L537W/E542R). The selected substitutions at positions Leu537 and Glu542 increase the melting temperature by approximately 10 and 14 degrees C, respectively, relative to the wild-type enzyme. Although both wild-type and single mutants showed first-order inactivation kinetics, thermal unfolding and inactivation was more complex for the double mutants, showing two distinct phases, as revealed by microcalorimetry and CD spectroscopy. Structural information on the variants does not provide a definitive answer with respect to the stabilizing effects or the alteration of the unfolding process. Distinct differences, however, are observed for the P2Ox Leu537 variants at the interfaces between the subunits, which results in tighter association.
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===Pyranose 2-oxidase from Trametes multicolor, E542K/L537W===
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Improving thermostability and catalytic activity of pyranose 2-oxidase from Trametes multicolor by rational and semi-rational design.,Spadiut O, Leitner C, Salaheddin C, Varga B, Vertessy BG, Tan TC, Divne C, Haltrich D FEBS J. 2009 Feb;276(3):776-92. PMID:19143837<ref>PMID:19143837</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 3bly" style="background-color:#fffaf0;"></div>
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==See Also==
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The line below this paragraph, {{ABSTRACT_PUBMED_19143837}}, adds the Publication Abstract to the page
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*[[Pyranose oxidase|Pyranose oxidase]]
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(as it appears on PubMed at http://www.pubmed.gov), where 19143837 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_19143837}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Coriolus zonatus]]
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3BLY is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Trametes_ochracea Trametes ochracea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BLY OCA].
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[[Category: Large Structures]]
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==Reference==
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<ref group="xtra">PMID:19143837</ref><references group="xtra"/>
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[[Category: Pyranose oxidase]]
[[Category: Pyranose oxidase]]
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[[Category: Trametes ochracea]]
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[[Category: Divne, C]]
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[[Category: Divne, C.]]
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[[Category: Tan, T C]]
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[[Category: Tan, T C.]]
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[[Category: E542k/l537w thermostable mutant]]
[[Category: E542k/l537w thermostable mutant]]
[[Category: Gmc oxidoreductase]]
[[Category: Gmc oxidoreductase]]
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[[Category: Oxidoreductase]]
[[Category: Oxidoreductase]]
[[Category: Phbh fold]]
[[Category: Phbh fold]]
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[[Category: Rossman fold]]
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[[Category: Rossmann fold]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Feb 15 08:46:25 2009''
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Current revision

Pyranose 2-oxidase from Trametes multicolor, E542K/L537W

PDB ID 3bly

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