1kx1

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:04, 3 April 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1kx1.png|left|200px]]
 
-
<!--
+
==Rat mannose protein A complexed with Man6-GlcNAc2-Asn==
-
The line below this paragraph, containing "STRUCTURE_1kx1", creates the "Structure Box" on the page.
+
<StructureSection load='1kx1' size='340' side='right'caption='[[1kx1]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1kx1]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KX1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1KX1 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene></td></tr>
-
{{STRUCTURE_1kx1| PDB=1kx1 | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1kx1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1kx1 OCA], [https://pdbe.org/1kx1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1kx1 RCSB], [https://www.ebi.ac.uk/pdbsum/1kx1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1kx1 ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/MBL1_RAT MBL1_RAT] Calcium-dependent lectin involved in innate immune defense. Binds mannose, fucose and N-acetylglucosamine on different microorganisms and activates the lectin complement pathway. Binds to late apoptotic cells, as well as to apoptotic blebs and to necrotic cells, but not to early apoptotic cells, facilitating their uptake by macrophages (By similarity).
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kx/1kx1_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1kx1 ConSurf].
 +
<div style="clear:both"></div>
-
===Rat mannose protein A complexed with Man6-GlcNAc2-Asn===
+
==See Also==
-
 
+
*[[Mannose-binding protein|Mannose-binding protein]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_11850428}}, adds the Publication Abstract to the page
+
[[Category: Large Structures]]
-
(as it appears on PubMed at http://www.pubmed.gov), where 11850428 is the PubMed ID number.
+
-
-->
+
-
{{ABSTRACT_PUBMED_11850428}}
+
-
 
+
-
==About this Structure==
+
-
1KX1 is a 6 chains structure of sequences from [http://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KX1 OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:11850428</ref><references group="xtra"/>
+
[[Category: Rattus norvegicus]]
[[Category: Rattus norvegicus]]
-
[[Category: Clark, D A.]]
+
[[Category: Clark DA]]
-
[[Category: Drickamer, K.]]
+
[[Category: Drickamer K]]
-
[[Category: Feinberg, H.]]
+
[[Category: Feinberg H]]
-
[[Category: Kolatkar, A R.]]
+
[[Category: Kolatkar AR]]
-
[[Category: Ng, K K.]]
+
[[Category: Ng KK]]
-
[[Category: Park-Snyder, S.]]
+
[[Category: Park-Snyder S]]
-
[[Category: Weis, W I.]]
+
[[Category: Weis WI]]
-
[[Category: C-type lectin]]
+
-
[[Category: Calcium-binding protein]]
+
-
[[Category: Lectin]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 10:30:00 2009''
+

Current revision

Rat mannose protein A complexed with Man6-GlcNAc2-Asn

PDB ID 1kx1

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools