This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1jmp

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:53, 3 April 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1jmp.png|left|200px]]
 
-
<!--
+
==Solution Structure of the Viscotoxin B==
-
The line below this paragraph, containing "STRUCTURE_1jmp", creates the "Structure Box" on the page.
+
<StructureSection load='1jmp' size='340' side='right'caption='[[1jmp]]' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1jmp]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Viscum_album Viscum album]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JMP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1JMP FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1jmp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jmp OCA], [https://pdbe.org/1jmp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1jmp RCSB], [https://www.ebi.ac.uk/pdbsum/1jmp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1jmp ProSAT]</span></td></tr>
-
{{STRUCTURE_1jmp| PDB=1jmp | SCENE= }}
+
</table>
-
 
+
== Function ==
-
===Solution Structure of the Viscotoxin B===
+
[https://www.uniprot.org/uniprot/THNB_VISAL THNB_VISAL] Thionins are small plant proteins which are toxic to animal cells. They seem to exert their toxic effect at the level of the cell membrane. Their precise function is not known.[REFERENCE:3]
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
<!--
+
Check<jmol>
-
The line below this paragraph, {{ABSTRACT_PUBMED_12733989}}, adds the Publication Abstract to the page
+
<jmolCheckbox>
-
(as it appears on PubMed at http://www.pubmed.gov), where 12733989 is the PubMed ID number.
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jm/1jmp_consurf.spt"</scriptWhenChecked>
-
-->
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
{{ABSTRACT_PUBMED_12733989}}
+
<text>to colour the structure by Evolutionary Conservation</text>
-
 
+
</jmolCheckbox>
-
==About this Structure==
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1jmp ConSurf].
-
1JMP is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Viscum_album Viscum album]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JMP OCA].
+
<div style="clear:both"></div>
-
 
+
__TOC__
-
==Reference==
+
</StructureSection>
-
<ref group="xtra">PMID:12733989</ref><references group="xtra"/>
+
[[Category: Large Structures]]
[[Category: Viscum album]]
[[Category: Viscum album]]
-
[[Category: Bernard, C.]]
+
[[Category: Bernard C]]
-
[[Category: Coulon, A.]]
+
[[Category: Coulon A]]
-
[[Category: Darbon, H.]]
+
[[Category: Darbon H]]
-
[[Category: Mosbah, A.]]
+
[[Category: Mosbah A]]
-
[[Category: Rouge, P.]]
+
[[Category: Rouge P]]
-
[[Category: Urech, K.]]
+
[[Category: Urech K]]
-
[[Category: Nmr]]
+
-
[[Category: Thionin]]
+
-
[[Category: Viscotoxin]]
+
-
[[Category: Viscum album]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 10:53:57 2009''
+

Current revision

Solution Structure of the Viscotoxin B

PDB ID 1jmp

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools