1xgi

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: 200px<br /><applet load="1xgi" size="450" color="white" frame="true" align="right" spinBox="true" caption="1xgi, resolution 1.96&Aring;" /> '''AmpC beta-lactamase ...)
Current revision (06:45, 23 August 2023) (edit) (undo)
 
(15 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1xgi.gif|left|200px]]<br /><applet load="1xgi" size="450" color="white" frame="true" align="right" spinBox="true"
 
-
caption="1xgi, resolution 1.96&Aring;" />
 
-
'''AmpC beta-lactamase in complex with 3-(3-nitro-phenylsulfamoyl)-thiophene-2-carboxylic acid'''<br />
 
-
==Overview==
+
==AmpC beta-lactamase in complex with 3-(3-nitro-phenylsulfamoyl)-thiophene-2-carboxylic acid==
-
Bacterial expression of beta-lactamases is the most widespread resistance, mechanism to beta-lactam antibiotics, such as penicillins and, cephalosporins. There is a pressing need for novel, non-beta-lactam, inhibitors of these enzymes. One previously discovered novel inhibitor of, the beta-lactamase AmpC, compound 1, has several favorable properties: it, is chemically dissimilar to beta-lactams and is a noncovalent, competitive, inhibitor of the enzyme. However, at 26 microM its activity is modest., Using the X-ray structure of the AmpC/1 complex as a template, 14, analogues were designed and synthesized. The most active of these, compound 10, had a K(i) of 1 microM, 26-fold better than the lead. To, understand the origins of this improved activity, the structures of AmpC, in complex with compound 10 and an analogue, compound 11, were determined, by X-ray crystallography to 1.97 and 1.96 A, respectively. Compound 10 was, active in cell culture, reversing resistance to the third generation, cephalosporin ceftazidime in bacterial pathogens expressing AmpC. In, contrast to beta-lactam-based inhibitors clavulanate and cefoxitin, compound 10 did not up-regulate beta-lactamase expression in cell culture, but simply inhibited the enzyme expressed by the resistant bacteria. Its, escape from this resistance mechanism derives from its dissimilarity to, beta-lactam antibiotics.
+
<StructureSection load='1xgi' size='340' side='right'caption='[[1xgi]], [[Resolution|resolution]] 1.96&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[1xgi]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XGI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1XGI FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.96&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NST:3-{[(3-NITROANILINE]SULFONYL}THIOPHENE-2-CARBOXYLIC+ACID'>NST</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1xgi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xgi OCA], [https://pdbe.org/1xgi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1xgi RCSB], [https://www.ebi.ac.uk/pdbsum/1xgi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1xgi ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/AMPC_ECOLI AMPC_ECOLI] This protein is a serine beta-lactamase with a substrate specificity for cephalosporins.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xg/1xgi_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1xgi ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Bacterial expression of beta-lactamases is the most widespread resistance mechanism to beta-lactam antibiotics, such as penicillins and cephalosporins. There is a pressing need for novel, non-beta-lactam inhibitors of these enzymes. One previously discovered novel inhibitor of the beta-lactamase AmpC, compound 1, has several favorable properties: it is chemically dissimilar to beta-lactams and is a noncovalent, competitive inhibitor of the enzyme. However, at 26 microM its activity is modest. Using the X-ray structure of the AmpC/1 complex as a template, 14 analogues were designed and synthesized. The most active of these, compound 10, had a K(i) of 1 microM, 26-fold better than the lead. To understand the origins of this improved activity, the structures of AmpC in complex with compound 10 and an analogue, compound 11, were determined by X-ray crystallography to 1.97 and 1.96 A, respectively. Compound 10 was active in cell culture, reversing resistance to the third generation cephalosporin ceftazidime in bacterial pathogens expressing AmpC. In contrast to beta-lactam-based inhibitors clavulanate and cefoxitin, compound 10 did not up-regulate beta-lactamase expression in cell culture but simply inhibited the enzyme expressed by the resistant bacteria. Its escape from this resistance mechanism derives from its dissimilarity to beta-lactam antibiotics.
-
==About this Structure==
+
Structure-based optimization of a non-beta-lactam lead results in inhibitors that do not up-regulate beta-lactamase expression in cell culture.,Tondi D, Morandi F, Bonnet R, Costi MP, Shoichet BK J Am Chem Soc. 2005 Apr 6;127(13):4632-9. PMID:15796528<ref>PMID:15796528</ref>
-
1XGI is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] with NST as [http://en.wikipedia.org/wiki/ligand ligand]. Active as [http://en.wikipedia.org/wiki/Beta-lactamase Beta-lactamase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.2.6 3.5.2.6] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1XGI OCA].
+
-
==Reference==
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
Structure-based optimization of a non-beta-lactam lead results in inhibitors that do not up-regulate beta-lactamase expression in cell culture., Tondi D, Morandi F, Bonnet R, Costi MP, Shoichet BK, J Am Chem Soc. 2005 Apr 6;127(13):4632-9. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=15796528 15796528]
+
</div>
-
[[Category: Beta-lactamase]]
+
<div class="pdbe-citations 1xgi" style="background-color:#fffaf0;"></div>
-
[[Category: Escherichia coli]]
+
-
[[Category: Single protein]]
+
-
[[Category: Bonnet, R.]]
+
-
[[Category: Costi, M.P.]]
+
-
[[Category: Morandi, F.]]
+
-
[[Category: Shoichet, B.K.]]
+
-
[[Category: Tondi, D.]]
+
-
[[Category: NST]]
+
-
[[Category: ampc]]
+
-
[[Category: beta-lactamase]]
+
-
[[Category: cephalosporinase]]
+
-
[[Category: serine hydrolase]]
+
-
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Wed Nov 21 06:03:49 2007''
+
==See Also==
 +
*[[Beta-lactamase 3D structures|Beta-lactamase 3D structures]]
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Escherichia coli]]
 +
[[Category: Large Structures]]
 +
[[Category: Bonnet R]]
 +
[[Category: Costi MP]]
 +
[[Category: Morandi F]]
 +
[[Category: Shoichet BK]]
 +
[[Category: Tondi D]]

Current revision

AmpC beta-lactamase in complex with 3-(3-nitro-phenylsulfamoyl)-thiophene-2-carboxylic acid

PDB ID 1xgi

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools