1gdv

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{{Seed}}
 
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[[Image:1gdv.png|left|200px]]
 
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==CRYSTAL STRUCTURE OF CYTOCHROME C6 FROM RED ALGA PORPHYRA YEZOENSIS AT 1.57 A RESOLUTION==
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The line below this paragraph, containing "STRUCTURE_1gdv", creates the "Structure Box" on the page.
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<StructureSection load='1gdv' size='340' side='right'caption='[[1gdv]], [[Resolution|resolution]] 1.57&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[1gdv]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Neopyropia_yezoensis Neopyropia yezoensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GDV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1GDV FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.57&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEC:HEME+C'>HEC</scene></td></tr>
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{{STRUCTURE_1gdv| PDB=1gdv | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1gdv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gdv OCA], [https://pdbe.org/1gdv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1gdv RCSB], [https://www.ebi.ac.uk/pdbsum/1gdv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1gdv ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/CYC6_NEOYE CYC6_NEOYE] Functions as an electron carrier between membrane-bound cytochrome b6-f and photosystem I in oxygenic photosynthesis.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gd/1gdv_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1gdv ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The crystal structure of cytochrome c(6) from the red alga Porphyra yezoensis has been determined at 1.57 A resolution. The crystal is tetragonal and belongs to space group P4(3)2(1)2, with unit-cell parameters a = b = 49.26 (3), c = 83.45 (4) A and one molecule per asymmetric unit. The structure was solved by the molecular-replacement method and refined with X-PLOR to an R factor of 19.9% and a free R factor of 25.4%. The overall structure of cytochrome c(6) follows the topology of class I c-type cytochromes in which the heme prosthetic group covalently binds to Cys14 and Cys17, and the iron has an octahedral coordination with His18 and Met58 as the axial ligands. The sequence and the structure of the eukaryotic red algal cytochrome c(6) are very similar to those of a prokaryotic cyanobacterial cytochrome c(6) rather than those of eukaryotic green algal c(6) cytochromes.
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===CRYSTAL STRUCTURE OF CYTOCHROME C6 FROM RED ALGA PORPHYRA YEZOENSIS AT 1.57 A RESOLUTION===
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Structure of cytochrome c6 from the red alga Porphyra yezoensis at 1. 57 A resolution.,Yamada S, Park SY, Shimizu H, Koshizuka Y, Kadokura K, Satoh T, Suruga K, Ogawa M, Isogai Y, Nishio T, Shiro Y, Oku T Acta Crystallogr D Biol Crystallogr. 2000 Dec;56(Pt 12):1577-82. PMID:11092924<ref>PMID:11092924</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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The line below this paragraph, {{ABSTRACT_PUBMED_11092924}}, adds the Publication Abstract to the page
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<div class="pdbe-citations 1gdv" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 11092924 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_11092924}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Large Structures]]
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1GDV is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Porphyra_yezoensis Porphyra yezoensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GDV OCA].
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[[Category: Neopyropia yezoensis]]
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[[Category: Oku T]]
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==Reference==
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[[Category: Park S-Y]]
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<ref group="xtra">PMID:11092924</ref><references group="xtra"/>
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[[Category: Shimizu H]]
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[[Category: Porphyra yezoensis]]
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[[Category: Shiro Y]]
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[[Category: Oku, T.]]
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[[Category: Yamada S]]
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[[Category: Park, S Y.]]
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[[Category: Shimizu, H.]]
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[[Category: Shiro, Y.]]
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[[Category: Yamada, S.]]
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[[Category: Crystal structure]]
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[[Category: Cytochrome c6]]
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[[Category: Red alga]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 12:14:53 2009''
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Current revision

CRYSTAL STRUCTURE OF CYTOCHROME C6 FROM RED ALGA PORPHYRA YEZOENSIS AT 1.57 A RESOLUTION

PDB ID 1gdv

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