1tcz

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:28, 23 August 2023) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1tcz.png|left|200px]]
 
-
<!--
+
==Crystal structure of a truncated version of the phage lamda protein gpD==
-
The line below this paragraph, containing "STRUCTURE_1tcz", creates the "Structure Box" on the page.
+
<StructureSection load='1tcz' size='340' side='right'caption='[[1tcz]], [[Resolution|resolution]] 1.85&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1tcz]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_virus_Lambda Escherichia virus Lambda]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TCZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1TCZ FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.85&#8491;</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1tcz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tcz OCA], [https://pdbe.org/1tcz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1tcz RCSB], [https://www.ebi.ac.uk/pdbsum/1tcz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1tcz ProSAT]</span></td></tr>
-
{{STRUCTURE_1tcz| PDB=1tcz | SCENE= }}
+
</table>
-
 
+
== Function ==
-
===Crystal structure of a truncated version of the phage lamda protein gpD===
+
[https://www.uniprot.org/uniprot/DECO_LAMBD DECO_LAMBD] Stabilizes the expansion of the capsid head shell after genome packaging. The packaging of viral genome in the procapsid triggers a dramatic reconfiguration of the capsid shell, expanding from roughly 50nm to 60nm while the capsid thickness decreases. 415 capsid decoration protein molecules cooperatively bind the expanded capsid, thereby stabilizing the mature capsid shell.<ref>PMID:18786402</ref> <ref>PMID:21821043</ref> <ref>PMID:8411174</ref>
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
==About this Structure==
+
Check<jmol>
-
1TCZ is a 6 chains structure of sequences from [http://en.wikipedia.org/wiki/Enterobacteria_phage_lambda Enterobacteria phage lambda]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TCZ OCA].
+
<jmolCheckbox>
-
 
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/tc/1tcz_consurf.spt"</scriptWhenChecked>
-
==Reference==
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
<ref group="xtra">PMID:15317025</ref><references group="xtra"/>
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Enterobacteria phage lambda]]
+
</jmolCheckbox>
-
[[Category: Chang, C.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1tcz ConSurf].
-
[[Category: Plueckthun, A.]]
+
<div style="clear:both"></div>
-
[[Category: Wlodawer, A.]]
+
== References ==
-
[[Category: Phage lamda protein gpd]]
+
<references/>
-
 
+
__TOC__
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 12:44:54 2009''
+
</StructureSection>
 +
[[Category: Escherichia virus Lambda]]
 +
[[Category: Large Structures]]
 +
[[Category: Chang C]]
 +
[[Category: Plueckthun A]]
 +
[[Category: Wlodawer A]]

Current revision

Crystal structure of a truncated version of the phage lamda protein gpD

PDB ID 1tcz

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools